Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1810 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1794 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1790 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1771 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1313 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1312 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1297 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 1286 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1280 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G59820 963 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008473 [exp] 2348 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 2209 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 2207 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1321 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1280 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1279 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1205 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1080 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 946 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197500 [exp] 1976 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1961 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1400 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1320 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1303 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1291 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1230 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 946 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 931 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 669 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10006017 pacid=23174237 polypeptide=Lus10006017 locus=Lus10006017.g ID=Lus10006017.BGIv1.0 annot-version=v1.0 ATGGGGCGGGGTAGGATAAGGTCTAAGCTACGGCGGAGGCAACTTCACCCATTTTCATTTTTAAGGCAAAAAACAAAAGAGGAGCAGGAGCCACATTCAC TGGAAGGCCCTGGATTCTCTAGAATTGTCCATTGCAATGAACCTGTAAAGCACAGGAGAAAACCCTTGAAATACTGTTCAAATTATATCTCAACCACCAA GTACAATGTTCTTACCTTCTTGCCCAAGGCACTGTTTGAACAGTTTCGACGGGTCGCCAATATCTACTTTCTTTTGGCAGCAATCCTTTCCCTAACCCCG GTTGCTCCATTCTCAGCAGTGAGCATGATTTTCCCTTTGGCTTTTGTTGTGGGTATTAGTATGGCAAAGGAAGCTTTGGAAGATTGGGGAAGGTTTATGC AAGACATGAAGGTTAATAGCCGGAAAACCTATGTTCACCAAGGGGATGGTAATTTTAGTTGCAAGACTTGGGAAAAGATACAAGTTGGTGATGTGATTAA GGTAGAGAAGGATCAGTTTTTTCCTGCTGATTTGCTTCTTTTGTCTACAAGTTATGAAGATGGGATTTGCTATGTTGAGACTATGAACCTTGATGGGGAA ACAAACTTGAAGATAAAGCGAGCTCTGGAGGTTACCTTACCTCTAGATGATGATGACACTTTCAAGAGCTTTTTAGGAATGATTAAATGTGAAGATCCAA ATCCAAGCTTGTACACCTTTGTTGGTAATTTCGAGTATGATCGTCAGGTTTATCCTCTTGATCCGAGTCAAGTTCTCCTCAGGGATTCAAAGCTTAGGAA TACAGCTTTTATTTATGGGGTTGTGTTATTCACTGGTTTTGATAGCAAAGTCATGCAGAATTCAACAAAATCACCTTCCAAAAGGAGCAGAGTGGAAAGA AAAATGGACAAGATTATATATATCCTCTTCAGCTTCCTTGTGTTGATTTCATTGATGAGCTCAATTGGTTTTGCTGTCAAGATTAAGTTCCAAATGCCAG ACTGGTGGTATATGCAACCTTTGAAGCCTGAAGAATTGTATGATCCTAGCAGTCCTTCCAAGTCTGGTTTGTCAAGCATGTTCATCGACCAAGGTATACA TATGTACGATGAAGAAACTGGTAATACTGCTAAAGCAAGGACATCAAATTTAAATGAAGAGTTGGGACAGGTTGACACCATCCTTTCCGACAAAACCGGT ACCTTAACATGCAATCAAATGGACTTTTTGAAGTGTTCAATTGCTGGTCATCCATACGGCATACGCTCCAGTGAGGTTGAACTTGCTGCAGCAAAACAGA TGGCTATTGACCTTGAGGATCAGGATGATCGAATTTCAACTAGTTCCCGGGGAAATACTGGTACCAGAAGTTCGTGGGAAAGGTCAGGAGATCCAGAGAT TGAACTAGAGACTGTCATTACTTCTAGAGACGAGGAAGAATATAAACATGCAATTAAAGGGTTTAGCTTTGAGGATAGCCGCCTTATGGACGGGAACTGG GTGAATGAGCCTAATCCTGATATCCTTATGCTGTTTTTCCGGATATTGGCAATTTGTCATACGGCGGTTCCTGAACTTAATGAAGAGACTGGAGTATTTA CATATGAAGCAGAGTCCCCGGATGAAGGAGCTTTCCTTGTTGCAGCTAGAGAATTTGGTTTTGAGTTCTTCAAAAGAACTCAATCCAGTGTCTCTGTGCG TGAGAGAATGCGTCCAGGAAAAGTGGTTGAAAGAGAGTATAAACTTCTAAATCTGTTGGAATTCACAAGCAAGAGGAAGCGGATGTCGGTAATTGTGCAG GATGAGGATGGGCAGATTCTAGTCATGAGCAAAGGTGCTGACAGCATCATTTTTGATCGGCTGTCAAAGAACGGAAGAGCATATGAGGAAGCCACTACGA AGCATTTGAACGATTATGGAGAAGCTGGATTACGTACATTGGTACTTGCTTATAAAAAGCTTGACGAGTCGGAGTATAATGCCTGGAACAAAGAATTTGT CAAAGCAAAAACATCGATTGGTGCTGACAGGGAAGTGATGCTTGAGAGAGTAGCAGACATGATGGAAAAAGACTTTATTCTTGTTGGTGCTACCGCTGTG GAGGATAAGTTGCAACAAGGGGTGCCGCAATGCATAGATAAACTTGCACAGGCTGGTCTAAAGCTATGGGTTTTGACAGGAGATAAGATGGAAACTGCAA TCAACATTGGATACTCTTGTAGTTTGCTTCGGCAAGGCATGAGACAAATCGTTATATCAGCATTGAATTCGGAGAACTTAGCCCAAGACTCAAAGCAGGC TGTGAAGGGCAATATATTGAACCAACTTACCAATGCCTCCCAAATGATCAAGCTGGAAAAAGACCCACATGCCGCGTTTGCACTAATTATTGATGGGAAG ACACTAACCTACGTTTTGGAGGATGACATGAAGTACCAGTTCTTGGCTTTAGCAGTTGACTGTGCATCTGTGATATGTTGTCGCGTCTCTCCCAAACAGA AGGCATTGGTTACCCGGTTGGTAAAAGAAGGCACCGGAAGAACAACCTTGGCAATAGGCGACGGGGCAAATGACGTTGGAATGATTCAAGAAGCTGACAT TGGTGTTGGTATCAGTGGTGTGGAAGGCATGCAAGCAGTGATGGCAAGTGATTTCTCAATTTCACAATTCCGGTTCTTGGAAAGACTTCTTGTTGTCCAT GGACACTGGTGCTACAAGAGAATAGCTCAGATGATCTGCTATTTCTTCTACAAGAACATTGCATTTGGTCTCACGCTCTTCTACTTTGAGGCATTCACTG CCTTCTCCGGGCAATCTATTTATGACGATTGGTACATGCTTCTGTTCAATGTCCTCCTCACCTCATTGCCAGTTATTTCACTTGGAGTTTTTGAACAAGA TGTTCCTTCGGAAGTCTGCTTACAGTTCCCAGCATTATATCAGCAAGGGCCGAAGAACTTGTTCTTTGACTGGTACAGGATACTTGGATGGATGGGGAAC GGTCTATACTCCTCACTCGCCATTTACTTCCTCAACATACTAATCTTGTCTAACCAAGCATTCCGAGCTGGAGGCCAGACAGCAGACATGGCTGCAGTCG GGACAACAATGTTCTCGTGCATCATCTGCTCGGTAAATTGCCAGATTGCACTAACAATGAGCCACTTCACATGGATCCAACACGTCTTGGTGTGGGGAAG CATTGGGACATGGTTCTTGTTCCTGTTTGTGTATGGGATGGTATCTCCAACCTACTCAGGGAATGCCTACCAAATCCTGGTGGAAGCTCTTGGTCCGGCA CCCATCTACTGGCTTGCAATCCTCTTGGTAACAGTCACTTGCAACCTTCCTTATCTAGCTCACATTTCATTCCAGAGATGTTTCAATCCAATGGACCACC ACATCATACAAGAGATCAAGTACTATAGGAAGGATGTAGAGGATCAACATATGTGGAGAAGGGAAAGATCCAAGGCTAGGCAAGAAACAAAGATTGGATT TTCAGCTAGAGTTGATGCAAAGATCAGGCTATTGAGAGGTAGACTGCAAAAGAAGAACACTTTAGCACTGCACAGTAATAGGCCGTCACAGTCTTAA
AA sequence Show only first row Show all	>Lus10006017 pacid=23174237 polypeptide=Lus10006017 locus=Lus10006017.g ID=Lus10006017.BGIv1.0 annot-version=v1.0 MGRGRIRSKLRRRQLHPFSFLRQKTKEEQEPHSLEGPGFSRIVHCNEPVKHRRKPLKYCSNYISTTKYNVLTFLPKALFEQFRRVANIYFLLAAILSLTP VAPFSAVSMIFPLAFVVGISMAKEALEDWGRFMQDMKVNSRKTYVHQGDGNFSCKTWEKIQVGDVIKVEKDQFFPADLLLLSTSYEDGICYVETMNLDGE TNLKIKRALEVTLPLDDDDTFKSFLGMIKCEDPNPSLYTFVGNFEYDRQVYPLDPSQVLLRDSKLRNTAFIYGVVLFTGFDSKVMQNSTKSPSKRSRVER KMDKIIYILFSFLVLISLMSSIGFAVKIKFQMPDWWYMQPLKPEELYDPSSPSKSGLSSMFIDQGIHMYDEETGNTAKARTSNLNEELGQVDTILSDKTG TLTCNQMDFLKCSIAGHPYGIRSSEVELAAAKQMAIDLEDQDDRISTSSRGNTGTRSSWERSGDPEIELETVITSRDEEEYKHAIKGFSFEDSRLMDGNW VNEPNPDILMLFFRILAICHTAVPELNEETGVFTYEAESPDEGAFLVAAREFGFEFFKRTQSSVSVRERMRPGKVVEREYKLLNLLEFTSKRKRMSVIVQ DEDGQILVMSKGADSIIFDRLSKNGRAYEEATTKHLNDYGEAGLRTLVLAYKKLDESEYNAWNKEFVKAKTSIGADREVMLERVADMMEKDFILVGATAV EDKLQQGVPQCIDKLAQAGLKLWVLTGDKMETAINIGYSCSLLRQGMRQIVISALNSENLAQDSKQAVKGNILNQLTNASQMIKLEKDPHAAFALIIDGK TLTYVLEDDMKYQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGRTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSISQFRFLERLLVVH GHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTAFSGQSIYDDWYMLLFNVLLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGN GLYSSLAIYFLNILILSNQAFRAGGQTADMAAVGTTMFSCIICSVNCQIALTMSHFTWIQHVLVWGSIGTWFLFLFVYGMVSPTYSGNAYQILVEALGPA PIYWLAILLVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYRKDVEDQHMWRRERSKARQETKIGFSARVDAKIRLLRGRLQKKNTLALHSNRPSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17500			ATPase E1-E2 type family prote...		Lus10006017 [exp]	0	1
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	2.6	0.7158
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	15.4	0.6999
AT1G68490			unknown protein		Lus10041444 [exp]	15.8	0.6291
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	16.1	0.6823
AT3G06670			binding (.1.2)		Lus10037742 [exp]	19.6	0.7009
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	26.5	0.6938
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	27.0	0.6849
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	38.0	0.6785
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	40.5	0.6716
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	44.2	0.6576

Compare expression of checked genes

Lus10006017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.