Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19460 85 / 1e-22 Protein of unknown function (DUF3511) (.1) AT5G11970 79 / 3e-20 Protein of unknown function (DUF3511) (.1) AT1G72720 62 / 3e-13 Protein of unknown function (DUF3511) (.1) AT3G05725 59 / 2e-12 Protein of unknown function (DUF3511) (.1) AT3G13910 58 / 3e-12 Protein of unknown function (DUF3511) (.1) AT2G47480 57 / 2e-11 Protein of unknown function (DUF3511) (.1) AT3G62640 54 / 2e-10 Protein of unknown function (DUF3511) (.1) AT4G09890 50 / 4e-09 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008471 [exp] 194 / 1e-65 AT2G19460 95 / 1e-26 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 89 / 6e-24 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10027629 [exp] 86 / 2e-22 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 82 / 5e-21 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 76 / 1e-18 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10010929 [exp] 54 / 2e-10 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10031405 [exp] 54 / 2e-10 AT3G05725 71 / 6e-17 Protein of unknown function (DUF3511) (.1) Lus10033529 [exp] 52 / 1e-09 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10020842 [exp] 49 / 2e-08 AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197700 [exp] 113 / 1e-33 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 103 / 8e-30 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.006G147700 [exp] 82 / 3e-21 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 77 / 3e-19 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 61 / 3e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 57 / 9e-12 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 54 / 8e-11 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.010G140800 [exp] 50 / 3e-09 AT2G47480 62 / 2e-14 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 50 / 3e-09 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 50 / 3e-09 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10006019 pacid=23174240 polypeptide=Lus10006019 locus=Lus10006019.g ID=Lus10006019.BGIv1.0 annot-version=v1.0 ATGGAGAACTATAGATCTAAGTCCTGCAGAGATAGGAGGATGCCCGTGGAGTTAGGGTACGAGCAGCAAGCGGTAGCAGCACCACCACCACCACCAAGAA ACATGCAAGGATTGAGGTCTTATAGTGTGAGCTGTGGAGCAGGACAGCCCCCTCATGAAGAGAAGGGGAAGGCTCATGTTGAGGTTGTTGGTTCAAAAAG CTGGGGGCTAAATTTGGATCCAGAGCTCCAGAGGAAGAAAAGGGTTGTTAGTTACAAAGCTTACTCGATGGAAGGGAAGATGAAAGGGTCGTTTCGGAAG AGCTTCAGGTGGATCAAGGATACCTGCAACCAAGTTGTGTATGGAAGGAAGTAG
AA sequence Show only first row Show all	>Lus10006019 pacid=23174240 polypeptide=Lus10006019 locus=Lus10006019.g ID=Lus10006019.BGIv1.0 annot-version=v1.0 MENYRSKSCRDRRMPVELGYEQQAVAAPPPPPRNMQGLRSYSVSCGAGQPPHEEKGKAHVEVVGSKSWGLNLDPELQRKKRVVSYKAYSMEGKMKGSFRK SFRWIKDTCNQVVYGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	0	1
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	1.0	0.8563
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011557 [exp]	1.4	0.8268
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018711 [exp]	3.0	0.8079
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	13.6	0.7823
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10020927 [exp]	14.0	0.7593
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	14.7	0.6891
AT5G65030			unknown protein		Lus10024055 [exp]	17.0	0.7426
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	17.1	0.7717
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	27.9	0.7334
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	36.9	0.7765

Compare expression of checked genes

Lus10006019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.