Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72750 207 / 2e-68 ATTIM23-2 translocase inner membrane subunit 23-2 (.1) AT1G17530 205 / 1e-67 ATTIM23-1 translocase of inner mitochondrial membrane 23 (.1) AT3G04800 129 / 1e-37 ATTIM23-3 translocase inner membrane subunit 23-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008470 [exp] 292 / 6e-102 AT1G17530 244 / 3e-83 translocase of inner mitochondrial membrane 23 (.1) Lus10009183 [exp] 153 / 2e-47 AT1G17530 198 / 4e-65 translocase of inner mitochondrial membrane 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044100 [exp] 229 / 3e-77 AT1G17530 179 / 9e-58 translocase of inner mitochondrial membrane 23 (.1) Potri.001G198100 [exp] 229 / 3e-77 AT1G17530 154 / 6e-48 translocase of inner mitochondrial membrane 23 (.1) Potri.013G039200 [exp] 151 / 9e-47 AT3G04800 190 / 5e-62 translocase inner membrane subunit 23-3 (.1) Potri.005G051800 [exp] 147 / 3e-45 AT3G04800 187 / 4e-61 translocase inner membrane subunit 23-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10006020 pacid=23174238 polypeptide=Lus10006020 locus=Lus10006020.g ID=Lus10006020.BGIv1.0 annot-version=v1.0 ATGGCTTTCTCCCACTCCGATCACAATCGCGATCCCGATTCTTCTCGCCACCAATCTGAACACACCAGGCTATACAACCCTTACCAGGACCTCAACACCC CAATCAAAACCCTATACAATCTCCCAACCTCGCCAGAGTACCTCTTCTCCGAGGAATCCGTGAAGCAGCGCCGTTCCTGGGGTGAGAATCTCACCTTCTA CACCGGAACCGCCTACCTGGGCGCATCTGTCGGCGGAGGCGGCGTTGGGCTTTTCTCCGCTGTGAAGTCGTTCGAGGCTAACGACACGTTGAAGCTAAAG GTGAATAGGGTTCTGAACAGTTCGGGTCACTCAGGTCGGGTTTGGGGGAACCGGATCGGGATCGTTGGGTTGATCTATGCGATGACGGAGAGTGGGATTG TGGCGGCTACTGATAAGGATGATGTTTGGACAAGTGTGGCGGCTGGGCTTGGGACAGGCGCTGTTTGCAGAGCGGCTAGAGGGTTGAGGTCTGCTGCGGT GGCCGGTGCTTTGGGAGGTCTTGCTGCGGGAGCTGTGGTGGCCGGGAAGCAGGCGATGAAGAGGTATGCTATGATTTGA
AA sequence Show only first row Show all	>Lus10006020 pacid=23174238 polypeptide=Lus10006020 locus=Lus10006020.g ID=Lus10006020.BGIv1.0 annot-version=v1.0 MAFSHSDHNRDPDSSRHQSEHTRLYNPYQDLNTPIKTLYNLPTSPEYLFSEESVKQRRSWGENLTFYTGTAYLGASVGGGGVGLFSAVKSFEANDTLKLK VNRVLNSSGHSGRVWGNRIGIVGLIYAMTESGIVAATDKDDVWTSVAAGLGTGAVCRAARGLRSAAVAGALGGLAAGAVVAGKQAMKRYAMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	0	1
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	3.5	0.9346
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	3.9	0.9381
AT1G67330			Protein of unknown function (D...		Lus10037026 [exp]	5.5	0.9165
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	7.1	0.9210
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	7.5	0.8380
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	9.0	0.8745
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	10.8	0.9188
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	11.5	0.9077
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	14.3	0.9159
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	15.7	0.8617

Compare expression of checked genes

Lus10006020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.