Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12000 566 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 538 / 0 protein kinase family protein (.1) AT1G16760 447 / 4e-147 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 438 / 1e-144 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G17540 424 / 2e-138 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 424 / 1e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 419 / 4e-136 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 414 / 5e-135 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 410 / 1e-132 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G72760 407 / 2e-132 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008466 [exp] 1167 / 0 AT5G12000 608 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 442 / 4e-148 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 441 / 1e-146 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 439 / 2e-146 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 436 / 1e-145 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 443 / 4e-145 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 438 / 3e-143 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 436 / 4e-142 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 433 / 4e-141 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225300 [exp] 563 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 483 / 2e-160 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.001G198300 [exp] 483 / 7e-160 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 461 / 3e-152 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 448 / 6e-148 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 444 / 6e-146 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 436 / 2e-142 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 417 / 3e-135 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 334 / 2e-105 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G147000 [exp] 318 / 5e-98 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10006021 pacid=23174235 polypeptide=Lus10006021 locus=Lus10006021.g ID=Lus10006021.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTGGCGGCTATGTTAGATCAAAATCAAACCTTGATGTTGAAAGTGTGGGAACAACAGCCATTGCTGTCGATATGGGGAAGAACAGCAATT TCGCTGTCAAATGGACTGCTGAAAATCTCTTGAAAAAAAGATCTTCTTCCTCTTGCATTCTTCTCCATGTTCATAACAAGCATGCACCTTCTCAGAATCC GAATGCACCAAATCAGAAGGAGTTCCAGCAGTTATTCCTTCCTTTCCGAGGATACTTTGCCAGAAAAGGGATTGAAGCACAAGAAGTGGTTCTATATGAT TCAGATATAGCAAAAGCTGTCCTGAAGTATATTGCCAAGAACTCCATCACCAATATTGTAACTGGTGCTACCAGTAAGAGCGCCTTCTCTAGGAAGTTTT GGAGCGTGAGTCTATCTACAACCTTAATTCAAGCTGCACCAGAATTCTGCTCAGTTTATGTAATTTCCAAAGGTAGAGTTCAAACCATGAGATTGGCAAA TCAGCCACCACCAACCTCTAAATCCTCCATCCCCGCTGCTACATCAAGAACAACCACCAAGACATCTCATATCCCTCCTCCTAGTATGGAGTCCTATGTA ATGTCCATTTCTGAGTACAGTTACAGCCAGGGAAGCTTGAACAGGATACCTTCGCATCCTCATGGAAAGCCTACTAGGTTCAATAAGGGACCAGTTTTTG ATGGTCATCATGATGCATGCATTGCTGATTCCATGTCCGATTTTAGCGAGTCCTCATCTTCCTTATCATCAGGAGTTCTACGGAGTTTCCAGTCTGTTGA TGTGTCGTACGATAATATGGACTTCTCTGCCACGTCAGCAAGTTCTGCAACCTCAACCAGCTCATCGGATAGCGTGCAATCAATGGAAGCAGAAATCAAG AGATTGAGGCTTGAGCTTAAACAAACTCTGGATGCGTACAATATGATTTGCAAAGAAGCCCACGTGGTTAATGAGATGAAAATGAAAATCCAAAATTCCA GTATCCATGAATCCAAAGAGCATGAGGAGGATTTGAAGGTGGAGTTGGAGTCAGAAATTTCAACACCAGATATAGAGTTACACAGGAGCAATGCTGCGAG AATAACAGAACTGTTATCAGAAATGGAAGCGCAAAAGAAACAGGACGCGGAAATGAAAGCCAGGTTTAGTGGTGCAAAAGAGAGGAGTCTCAACAACAAG TTAGTGGAATCACTTTCATATTATAACACCATGGGTAACCACAACCTTCCCTTCAGGAAATACAACATTCAAGATATAGAAGCATCAACAAACTACTTCT CACTATCCAAAAAGATTGGCGAAGGCGGCTACGGACCTGTTTATGTAGGTGTTATCGATGAAACCTCAGTGGCCATCAAGGTTGTAAGACCAGACTTGTC ACAAGGTCAAAAGCAGTTCCAAAAAGAGGTTGAGTTACTGAGCACGATGAGGCATCCTCATATGGTGACACTCCTTGGTGCATGTCCTCAGTACGGATGT TTGGTGTATGAATACATGGAGAATGGGAGCTTAGAAGACAGGTTATTCAGGAAAGACAACACTCCGCCAATCCCATGGAGTACAAGATTTAACATAGCTA CAGAGATCGCCACAGGGCTCCTCTTCCTCCATGAGTCCAAACCGGAGCCCATTGTCCATCGAGACCTGAAACCTGCAAACATTCTCTTGGATGGAAATTT TGTCAGCAAGATCGGCGATGTTGGATTAGCAAGGCTAGTCCCCGCGGCAGCAAACAACATCACGAGATATCATGTGACGGCGGCTGCTGGGACGTTCTGT TACATAGATCCAGAGTATCAACAAACAGGATTGTTGTCGGTGAAGTCGGATCTGTTCTCGTTAGGAGTGGTGTTGTTGCAGCTCATTACAGCGAAAACCC CAATGGGTTTGTCGTACCAGGTGGAGGAAGCTATTGAGAATGGGAGGTTCGCAGCAATGTTAGACCCAGCGGTGAAAGACTGGCCTGTGGATCAGGCAAC ATCGATGGCGAAGTTGGCGTTGCAGTGTTGTGAACTGAGGAAGAGGGACAGACCCAGCCTGGCTAATATTGTGCTTCCAGAGCCCAAGCGGTTGAGAGAT TTGGTAAATGGATGTGATGGTGATCATGGGGGAGGAGATATGATATGA
AA sequence Show only first row Show all	>Lus10006021 pacid=23174235 polypeptide=Lus10006021 locus=Lus10006021.g ID=Lus10006021.BGIv1.0 annot-version=v1.0 MAVAGGYVRSKSNLDVESVGTTAIAVDMGKNSNFAVKWTAENLLKKRSSSSCILLHVHNKHAPSQNPNAPNQKEFQQLFLPFRGYFARKGIEAQEVVLYD SDIAKAVLKYIAKNSITNIVTGATSKSAFSRKFWSVSLSTTLIQAAPEFCSVYVISKGRVQTMRLANQPPPTSKSSIPAATSRTTTKTSHIPPPSMESYV MSISEYSYSQGSLNRIPSHPHGKPTRFNKGPVFDGHHDACIADSMSDFSESSSSLSSGVLRSFQSVDVSYDNMDFSATSASSATSTSSSDSVQSMEAEIK RLRLELKQTLDAYNMICKEAHVVNEMKMKIQNSSIHESKEHEEDLKVELESEISTPDIELHRSNAARITELLSEMEAQKKQDAEMKARFSGAKERSLNNK LVESLSYYNTMGNHNLPFRKYNIQDIEASTNYFSLSKKIGEGGYGPVYVGVIDETSVAIKVVRPDLSQGQKQFQKEVELLSTMRHPHMVTLLGACPQYGC LVYEYMENGSLEDRLFRKDNTPPIPWSTRFNIATEIATGLLFLHESKPEPIVHRDLKPANILLDGNFVSKIGDVGLARLVPAAANNITRYHVTAAAGTFC YIDPEYQQTGLLSVKSDLFSLGVVLLQLITAKTPMGLSYQVEEAIENGRFAAMLDPAVKDWPVDQATSMAKLALQCCELRKRDRPSLANIVLPEPKRLRD LVNGCDGDHGGGDMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	0	1
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	1.4	0.9043
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	2.8	0.8369
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	6.0	0.8573
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	6.3	0.8555
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10024162 [exp]	7.9	0.8409
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	8.8	0.8577
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	12.1	0.8748
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	12.6	0.8177
					Lus10035963 [exp]	14.5	0.7854
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	16.4	0.8028

Compare expression of checked genes

Lus10006021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.