Plant FIBer expression Database

Lus10006024 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72790 104 / 2e-23 hydroxyproline-rich glycoprotein family protein (.1)
AT5G57070 78 / 6e-15 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008464
[exp]
640 / 0 AT1G72790 110 / 2e-25 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G198900
[exp]
122 / 4e-29 AT1G72790 181 / 7e-50 hydroxyproline-rich glycoprotein family protein (.1)
Potri.006G145900
[exp]
59 / 5e-09 AT5G57070 100 / 3e-22 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Lus10006024 pacid=23174236 polypeptide=Lus10006024 locus=Lus10006024.g ID=Lus10006024.BGIv1.0 annot-version=v1.0
ATGGAAGACGATGACATGTCATCACCTTTCTGGCTCCAAACACCCCAAGACCACCGCCGACGAAACATCTCCTCTCTCTTCCTCAACTCAGGCCTCCTCC
TCACCATCCTTGTCCTCATAGCTTGCCTTTTCGTCTTCCTTATCATCCCTTCTTTCCTCTCCTTCACTTCCCAAATCTTGAGACCGCATTCCCTCAAGAA
AAGTTGGGACTCCCTCAACTTAGTCCTCGTCCTCTTCGCCATTATCTGCGGCTTTCTCAGTCGTAATGGACTCCACAGGACCAACAGCACCGCCTACCAA
CACCCTGCTCCTTCCAATGCCACAACTAGTTCGACCACTTCTATTTACTATGCAGATCCAACCTCGGCAACCAAAGTATCATTATCGCCTACGAGATTCT
ATGATTACAACCACAATCAGGACCGCTTGACTCCATTCGGCGGCGTTGACGGTTTGAACAGGCTCAGAAGCTTCAAATCCTATCCAGATCTGAGGCACGA
ATCGCTGTGGATCGGCGGTGGTGTAGATGATCGATGGCGATTTTATGACGATACTCATGTTAGTGTCAGGGATTACCGATTTCCTTCCTCGGATGAGATT
CCAAGAGAGGAACAAGTGGTGGAGGAAGAGGAAAAGGACAAAGAGATAGATAAGCTGGAAGATGCTAAAGATATTGCCGTCGATACCTGTACGGCTGTGA
AGGATGACAAGGACAAGACGGAGAAGCTGGAGGATGCTCAGTCCGATCCACTTCCGATGGATTTGCCTCCTCCACCTGTTGCAGCTCCGATGGATTTTCC
GGCCAAAATTGGAAAGAAGAAAGTGCAGAGAACGTATCGCTCCATTGCACACTCTAAAAGTGGCGTTGACGAATGGAAAGAAACGGACATGGAGGATTTC
TATAAACGAAAGCCGTCGACATCATCATCGGTACCGAAACCGACTCCGTCGCAGAATACAGCTAGAAGAAAAGGTAAGCGGAACATTCACCGTCAAGAGA
TTGGACAGAGTATAGTTGAAGAACAGAAGACTGCGGAAGAAATCAAGTATGTCTATCTGCCACCACCATCACCGGCGCCTCCTCCACCTCCTCCGCCACC
AGAGAAGAAGAAGAGAAGTAAGGATTTCTTAATTTCTCTCAGACGAAAGAAGAAGAAGAAGCAGAGGCAAAACAGCGTTGAAAACCTCGTAAGCTTGTTC
GATCCGGAGTCTGAATATCAGGCTCCATCCTCCATCCCACCTCCATCGCCTCTACCTCCGCCTCCGCCACCTCCACCCCCTCCGCATTTCTTTCAGAATC
TCTTCTCTCCAAAGAGAGGAAAGTCCAAGAAAATCCACTCAGTGTCAATTGCACCACCTCCGCCGCCACCTCCTCCGCGACCCTCCAGCGCGAGTTCCGC
GGAAGTTTATCTTTCCAAGAGTGTCCGGCGACCGTCTGGATCACGAATCCAATCCGAACGACCGCTGGCAAGTGCGTACAGTTCACCAAAGCCGGTGAAG
ACGAGTAGTTTCGGAAGCATGGAAGACAATGCGGAGAGCGGGAATGCTTCGCCATTGATTCCGATACCGCCACCGCCTCCTCCTCCGCCGTTTAAGATGC
CAGCGTGGAAGTTCGAGGTTCGCGGGGACTACGTGAGAGTAGCTAGCTTTACGAGTTCGCGAAGTGGCTCGCCCGATCTGGACAGTGAGGATCCCTCCGA
CAGGGAATCGAGCCCAATGGCGGCGGCAGCGGCGTCGCCGTTGTTCTGCCCTAGTCCGGACGTGAACACGAAGGCTGATAATTTCATAGCGAGGTTCAAA
GCTGGTCTAAAGTTGGATAAGGTGAATTCTGGGAAGGGAAAGTCCAATCTCGGCCCATAA
AA sequence
>Lus10006024 pacid=23174236 polypeptide=Lus10006024 locus=Lus10006024.g ID=Lus10006024.BGIv1.0 annot-version=v1.0
MEDDDMSSPFWLQTPQDHRRRNISSLFLNSGLLLTILVLIACLFVFLIIPSFLSFTSQILRPHSLKKSWDSLNLVLVLFAIICGFLSRNGLHRTNSTAYQ
HPAPSNATTSSTTSIYYADPTSATKVSLSPTRFYDYNHNQDRLTPFGGVDGLNRLRSFKSYPDLRHESLWIGGGVDDRWRFYDDTHVSVRDYRFPSSDEI
PREEQVVEEEEKDKEIDKLEDAKDIAVDTCTAVKDDKDKTEKLEDAQSDPLPMDLPPPPVAAPMDFPAKIGKKKVQRTYRSIAHSKSGVDEWKETDMEDF
YKRKPSTSSSVPKPTPSQNTARRKGKRNIHRQEIGQSIVEEQKTAEEIKYVYLPPPSPAPPPPPPPPEKKKRSKDFLISLRRKKKKKQRQNSVENLVSLF
DPESEYQAPSSIPPPSPLPPPPPPPPPPHFFQNLFSPKRGKSKKIHSVSIAPPPPPPPPRPSSASSAEVYLSKSVRRPSGSRIQSERPLASAYSSPKPVK
TSSFGSMEDNAESGNASPLIPIPPPPPPPPFKMPAWKFEVRGDYVRVASFTSSRSGSPDLDSEDPSDRESSPMAAAAASPLFCPSPDVNTKADNFIARFK
AGLKLDKVNSGKGKSNLGP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72790 hydroxyproline-rich glycoprote... Lus10006024
[exp]
0 1
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Lus10031944
[exp]
2.4 0.8907
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10012162
[exp]
3.7 0.9120
AT2G40070 unknown protein Lus10037838
[exp]
4.2 0.8713
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Lus10038726
[exp]
5.2 0.8840
AT3G06035 Glycoprotein membrane precurso... Lus10034054
[exp]
5.7 0.9050
AT1G12420 ACR8 ACT domain repeat 8 (.1) Lus10007004
[exp]
15.0 0.8391
AT5G03690 Aldolase superfamily protein (... Lus10035571
[exp]
15.2 0.8876
AT5G49170 unknown protein Lus10006495
[exp]
16.4 0.8647
AT3G53520 ATUXS1, UXS1 UDP-glucuronic acid decarboxyl... Lus10025293
[exp]
17.4 0.8941
AT1G05810 ARA, Ara-1, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10025876
[exp]
21.7 0.8871

Lus10006024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.