Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21700 628 / 0 Protein of unknown function (DUF2921) (.1) AT1G52780 194 / 1e-50 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005493 [exp] 1921 / 0 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10030937 [exp] 479 / 2e-153 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052500 [exp] 1009 / 0 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.003G087400 [exp] 599 / 0 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.001G175600 [exp] 166 / 7e-42 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 126 / 3e-29 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [flax] [poplar] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Lus10006025 pacid=23146573 polypeptide=Lus10006025 locus=Lus10006025.g ID=Lus10006025.BGIv1.0 annot-version=v1.0 ATGATTGAATCAGGCGTTGGCCGATCGGCGTCTCCTCCTTCGTCACTGCTCAAATATACTCTCCGACATAGCTCAATGCTGATGCGATGTATCGTCTTAT TTTTCTCCTTCGCGTGCCTCCTTCTGGCCGACGGAAAGGCACCCATCTCGCCTGCTAATTTCCTTGCGGACTACCACAGGTTCTGCCACCAAACCGTCCC GGAGTCCCCCGCAGCTGCGGTGCCCATGAATTTTTCCCGCGGCGAAGATAGGGATCTCCACTTCGACATTGCCTACTTCACAGGCGGCAGCCAAATCTTC CCTGGGAAACCCACTGCCGATTCCGATGGGATTTCGCTCTCTTTCCACCCCAAGCGTCGCACTATCTACCTTACTGAGAATCCTGACGTGCTGAAGCTCC AAGCGACTCTCAGGTTTCACCTCCCTCCCCGTGGTTACTCTATGTGGCACCGGAATTTGAGACAGATCCGTTTCCGTGGTCCCAGAATTCCAGTGCGGAC CAAGTCCGTTGGATTCGAGTTCTATGGCTTTTGGTCAAGGAATACAGGGGAGCTGTGTATGGTGGGATCTGAATCCAGTCTTGCCAACTCGCGTGATGCA AGTTCTGCTCCCTCTTCCGGTGTTGCACTGAAGCTCAAGTATCCGGTTATTGCTGGTGGTGCTGGGAATGTAAGTAGTTTGATTCGCGGCTCTTTGGAGA GTACAATTCCCGGGGATAGTTTGAACTATTTCGAACCTGTTTCTATATTGGCTGTACCTCACTTTGGCGAGTACAACTACTCATTGATGAGTGAGGGGAC TGGGAATTGCTTAGGTCGAAGAGATGTTGGGGGTGAATTGTATGGGAATCTTCATCTTGAGTTACAACAACCAAGTCTTTGCTTATCTCAGTTGTACCAG TATGCTAGGAGTTTCGAATTGGAGTATGGTAGTGAATGTAGTGGGAATGCGAATGGCAGCAAGTGCAATCCTCTTAAAGTTGACTCTCAAGTTTTGCCAG GATTCATGACTATTCAAGGTATTAGATGTGATGATCACGGTATCAGAGTTTTGGTAGGGTTTCCGAACTCTATTGAATACTCATCTCGAGCTTTTGGTTA TGGCAGAGTTTTCAATCCGAACAATATGCTAATCGGTGAGGGTATCTGGGATGAGATGGAGAATAAACTGTGTGTCATGGCCTGTAGAGTCTTAAATTTT AACCATTCGCTGCATAATGCTTCAGTTGGTGATTGCTCAATTCAATTCAGCTTGAGATTTCCCAAAAGGTTGACCATTCAACATCGGAGTACCGTAGTAG GGCAAATCTCTAGCAGCAGAAGTGTCAATGACAGTGGCTACTTTCCTCCTGTTGGTTTTCATGGCTTTGGGAATAAGGTGAGGGGACTGCCTGGGCTGGA ATATAAGTATACTGTACTTGACATGGTTGCCAAATCTTGTGCTGGAAAGAAAATCACAAAAGGAAAAGGGACTTACCCTAGTGCTTATTCATTTGATATG AGATTTGACATGTCAGTGACCAACAGCCAGGGACAGAAAGCAGAAGGTAATTCTAGCCCTTTTTTTGTTGGCGATCAGTTCTATCAGCCATACCGAATGA ACAGCAAGAATATCAGACTCCTAAATGTGAGTTACAAGATCAGCTTCACGCCATCTTCTGGTTTTAAGTTGGGAGATGATCTTTTGTCTAATAGATCTGT TGATATTTCGGCTGAGGGAATATATGATAAAGACAATGGTGTGCTGTGCATGATTGGTTGCCGCCATTTGATCTCACATATTAAAAACCCTAGTAGAAAT GAAACAACTGATTGTAAGATCCTTATCACCATGAATTTTTCTCCTCTGAATTCAAAAGGTGTAGCTGATATCAAGGGAATCATTGAAAGTACGCGGGGGA AGGAAGATCCTCTTTATTTTGGGAAGCTGCAGACATCTTCACATGCAATTTACATTAAACAAGCCTCTGATTCTATTTGGAGAATGGATATAGAGATTGT CTTGGTATTAATTTCTAATACCCTTGCTTGTATATTTATTGGATTGCAACTTTATCACGTAAGTAAGTATCCTGAAGTGCTGCCCTTCATCTCTTTTCTA ATGCTCGTTGTTCTCACATTGGGTCACATGATACCGTTGCTATTAAACTTTGATGCGATGTTCACACAAACTTCGAGCCGACAGAATGTGTTTCTTGGAA GTGGTGGGTGGCTCGAGGTGAATGAAGTAATAGTGAGGGTGGTTACAATGATAGCTTTCCTTCTGCAGTTCCGCCTTCTCCAACTTTCTTGGTCTTCCAG GCAGACTGATGAAAGTCGCAAAAGCTTGTGGCTTTGTGAGAGAAGGGTTCTTTATTTGTCTTTACCACTTTATGCTGTTGGTGGGTTGATTGCTTGGTAT GCACACAGTTGGAAAAATTCCTACAAGAGACCGTATCTCCGACTTCGTAATCGGATGTATCAACAGCACTATCCTTGGGACGACCTCAAGTCTTATGCTG GTCTCATTCTTGATGGCTTTTTGCTCCCACAGATAGTGTTCAACTTAGTTTTGAACTCACGTGAAAATAGTCTTTCCGTGGCTTTTTACTTGGGGACAAC TATTGTCCGCTTGGTTCCACATGCATATGATCTTTATAGGGCTCATAGTGCCCCCTGGTACCTCGACTTATCGTACATATATGCAAATCACAGACAAGAC TTTTACTCCACATTTTGGAACATTGTCATCCCCATTGGTGGTTTGCTGTTTGCTGCAATCATTTACTCCCAGCAGAGGTTTGGTGGCCGTACTATTCTTC CAAAGAGATTTAGAGGGACTTCTGGCTATGAAAGGGTACCTACTGTCAACAGTGAGGAAATGACTACATATAGTCAACAACAAATTACTCTACAAGGATA G
AA sequence Show only first row Show all	>Lus10006025 pacid=23146573 polypeptide=Lus10006025 locus=Lus10006025.g ID=Lus10006025.BGIv1.0 annot-version=v1.0 MIESGVGRSASPPSSLLKYTLRHSSMLMRCIVLFFSFACLLLADGKAPISPANFLADYHRFCHQTVPESPAAAVPMNFSRGEDRDLHFDIAYFTGGSQIF PGKPTADSDGISLSFHPKRRTIYLTENPDVLKLQATLRFHLPPRGYSMWHRNLRQIRFRGPRIPVRTKSVGFEFYGFWSRNTGELCMVGSESSLANSRDA SSAPSSGVALKLKYPVIAGGAGNVSSLIRGSLESTIPGDSLNYFEPVSILAVPHFGEYNYSLMSEGTGNCLGRRDVGGELYGNLHLELQQPSLCLSQLYQ YARSFELEYGSECSGNANGSKCNPLKVDSQVLPGFMTIQGIRCDDHGIRVLVGFPNSIEYSSRAFGYGRVFNPNNMLIGEGIWDEMENKLCVMACRVLNF NHSLHNASVGDCSIQFSLRFPKRLTIQHRSTVVGQISSSRSVNDSGYFPPVGFHGFGNKVRGLPGLEYKYTVLDMVAKSCAGKKITKGKGTYPSAYSFDM RFDMSVTNSQGQKAEGNSSPFFVGDQFYQPYRMNSKNIRLLNVSYKISFTPSSGFKLGDDLLSNRSVDISAEGIYDKDNGVLCMIGCRHLISHIKNPSRN ETTDCKILITMNFSPLNSKGVADIKGIIESTRGKEDPLYFGKLQTSSHAIYIKQASDSIWRMDIEIVLVLISNTLACIFIGLQLYHVSKYPEVLPFISFL MLVVLTLGHMIPLLLNFDAMFTQTSSRQNVFLGSGGWLEVNEVIVRVVTMIAFLLQFRLLQLSWSSRQTDESRKSLWLCERRVLYLSLPLYAVGGLIAWY AHSWKNSYKRPYLRLRNRMYQQHYPWDDLKSYAGLILDGFLLPQIVFNLVLNSRENSLSVAFYLGTTIVRLVPHAYDLYRAHSAPWYLDLSYIYANHRQD FYSTFWNIVIPIGGLLFAAIIYSQQRFGGRTILPKRFRGTSGYERVPTVNSEEMTTYSQQQITLQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	0	1
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	4.9	0.9211
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	5.1	0.9305
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	6.2	0.9243
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	6.9	0.9294
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	9.5	0.9206
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	13.7	0.9120
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	13.9	0.9179
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	14.2	0.9135
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	15.5	0.9119
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	15.6	0.8947

Compare expression of checked genes

Lus10006025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.