Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 1034 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 639 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 619 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 550 / 1e-179 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 526 / 1e-170 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 521 / 3e-168 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G75820 516 / 8e-167 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 512 / 3e-165 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 511 / 5e-165 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G19700 490 / 5e-157 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005491 [exp] 1742 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10013968 [exp] 653 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10034978 [exp] 567 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 543 / 2e-177 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10039641 [exp] 525 / 2e-169 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 520 / 2e-168 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 518 / 1e-167 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 517 / 1e-166 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027221 [exp] 509 / 2e-163 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235800 [exp] 1219 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 1203 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 937 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 920 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 901 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 864 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 690 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 659 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 637 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 621 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006028 pacid=23146580 polypeptide=Lus10006028 locus=Lus10006028.g ID=Lus10006028.BGIv1.0 annot-version=v1.0 ATGTCCAAACTACCCCTCCGCTCCCTCCTGACTCATTTCCCACTTCTGCTACTCCTCTTCCTCCTCGCCTTACCCTTTTCAGTAATTTCACTGGGCCAGC TACCCATCCTCCTCAACCTCAAGCAACAGCTTGGGGACCCTCCTCTACTCCACTCCTGGTCCTCCTCCTCCTCCTCCGCCGCATCCGATCCATGCTCCTG GCCCGAAGTCAAATGCACCGCCGACGGCGCTGTCACCGAGCTCCACCTCTCCGATAAGAACATCACCGTCCCCATTCCGCCAACTGTCTGCAACTTCCGA AACCTTACCCTGCTAGACCTTTCCTGGAACTACATCCCCGGTGGCTTCCCCACGCTTCTCTACAACTGCTCCAGACTCCAGTACCTCGACCTCTCTCAGA ACTACTTCGTCGGCCCTCTCCCTGCCGACGTCCACCGCCTCTCCCCTTCCCTCAGTTACATCGACGTCGGCGCCAACAATTTCTCCGGCGACATCCCGCC CTCGATCGGTAACCTAACTGCGCTCCGCACACTTCGCCTCTACCAGAACCAGTTCAATGGAACTTTCCCTAAGGAGATCGGGAACTTGACCAACTTGGAA TCGTTGGAGATGGCTTTCAACGAGTTTGTGCCTTCTCCGATTCCTCCCCAGTTCGGTCAGCTGAAGAATCTTAGTTACTTCTGGATGAGAAGCGCTAACC TGATCGGGAATATCCCGGAATGGTTCGCCGACCTTCCAAATCTCGAGCACCTGGATTTGGCGGCCAACCATTTGCAAGGTGGAATACCAGATGGATTGTT GTCCCACCCGAAATTGCAAATTCTGTACCTCTTCCACAATCAATTGTCCGGTGAAATCCCTAAAACTGTGTCCGCGTTGAATTTGATCGAGATCGATGTT GGGATGAACAACCTCACCGGCTCTGTTTCGGAAGATTTCGGGAAGCTGAAGAAGCTCCAAATCTTGAATCTATTTAGCAACAAGTTATCCGGAGGCCTCC CTTCAAGTATCGCTCTACTTCCTGCTCTTAAGGAGATGAAGTTATTCACTAACAATTTCACCGGAGAATTGCCGACGGAGCTGGGGCTCCACTCCAAGCT CGAGATATTCGACATCGCGACCAACGGATTCAGTGGCCGGCTACCGGAGAATATCTGCGCTCGTGGGGTGTTGGAAGGGCTAGTAGCGTCTGAGAACAAT CTGAGCGGAGAGGTCCCTAAGTCCGTTGGAGATTGTCACCATCTGAAAACAATTCAGCTGTACAACAACAATTTTTCAGGGGAATTGCCGCCTGGAGTTT GGAGGTTGGTTAACATGACTTACTTGATGCTGAGTGACAATTCGTTTTCCGGCCCACTCCCGAGCTCAATAGCGTGGAATCTGTCGAGATTGGAGATTCA CAATAACAAGTTCTCCGGACCGATTCCGAAAGGAGTCGCCGATTGGAAAGGATTGGTAGTGTTTAAGGCGAGTAACAATCAGCTCTCCGGCGAGATCCCC GTTGAATTGACCAGCCTTTCTAGGCTGATAACTTTGCTCCTGGATGGGAATCAGTTATCAGGAAAATTCCCGTCTCAAATCATCTCGTGGAAATCTCTTT CTTCTTTACATCTCTCGAGAAACAAGCTTTCCGGGCCGATCCCGCCGGCAGTCGGGGAGTTACAGGACATTCTCGACCTAGATCTGTCCGGAAATCAATT CTCCGGCGAGATACCGAACGAGATGAACAACCTCAAGCTGACCGCGCTCAACTTGTCATCCAATCAACTGACGGGGAGAATCCCAAACAATTACAACAAT CTCGCTTACGAAAACAGCTTTCTCGATAATTCGAATCTCTGTGCTGTAAACCCGGTCCTGAACCTTCCTGACTGCAGAAATCGAGGAGGCATCAATGGCA GCTCCGGCAACAGGCTTTCGTCCAAGTATCTAGCCATGATTCTGGCCTTGGCAGTGATGGTCTTCCTTTTCGCTGTTCTGGTGACGTTCTCCGCCATCAG AGACCTGAGGAGGAAGAAGCAGAAACGGGATCTAGCGATGTGGAAGCTTACCTCATTCCAGAGAGTGGATTTCACTCAGGCGAATATATTGGCGAGCCTG AACGACAGTAACCTGATAGGAAGCGGCGGGTCAGGGAAAGTATACCGGATCCCGTTGAACAGAGAAGGTCATTTCGTTGCTGTGAAGAGGATATGGAGCG ATGCCAAGTTGGATGAGAAGCTGGAGAAAGAGTTTGCAGCGGAGGTTCAAATCTTGGGGACAATTAGGCACTCCAATATTGTGAAGCTGATGTGCTGCAT CTCGAGCGACGATTCTAAGCTTCTGGTGTACGAGTACATGGAGAACAATAGCCTGGATGGATGGCTCCATGGGAAGAAGAGGGCACCCGAGGCAAATTCA ACTCCTACTGGGGCTCTGGATTGGCCTACAAGACTGCAGATTGCTGCTGGGACTGCACAGGGCTTGTCCTATATGCACCATGAATGTTCACACCCAATAA TTCATAGAGATGTGAAGTCCAGCAACATCCTCCTTGATTCCCAGTTCAAAGCCCGGATGGCTGATTTCGGGTTGGCCAAGATGTTGACTAAATCTGGTGA AGCTCACACCATGTCTGCTGTAGCAGGCTCATTCGGCTACTTCGCTCCAGAGTATGCATACACGACGAAAGTGAACGAAAAAATCGACGTGTACAGCTTT GGAGTGGTGCTGCTAGAACTGGTTACAGGAAGACAAGCAAACAGTGGAGGCGAGAACACGAGCCTGGCAGAATGGGCATGGAAGCAGGTCGGAGAAGGAA ATCATCCGGTTGAAGAATGCCTGGATCAAGAGATTAAGAAAGAGAACAGCGTGGAGGAAATGACGACGGTGTTCAAGCTGGGTCTGATATGCACGAGTAC AGTGCCGTCATCAAGACCTTCGATGAAGGAGGTAGTGCAGGTTCTGAGGAGATTGTGCCCTGCAGAGAATTGCAACGGAGAGAAGAGGAATAACAACAGC AAGAATGAAAGGGAGTTCGATGTAGCACCTCTGCTGGGGAACGGGGTTACTTACCTCTCAAGTTACAGGCGGAGCAAGAAAGTCGGCGATGTTGATGTTG ATATCGATGACACTTACAGCGTTTGA
AA sequence Show only first row Show all	>Lus10006028 pacid=23146580 polypeptide=Lus10006028 locus=Lus10006028.g ID=Lus10006028.BGIv1.0 annot-version=v1.0 MSKLPLRSLLTHFPLLLLLFLLALPFSVISLGQLPILLNLKQQLGDPPLLHSWSSSSSSAASDPCSWPEVKCTADGAVTELHLSDKNITVPIPPTVCNFR NLTLLDLSWNYIPGGFPTLLYNCSRLQYLDLSQNYFVGPLPADVHRLSPSLSYIDVGANNFSGDIPPSIGNLTALRTLRLYQNQFNGTFPKEIGNLTNLE SLEMAFNEFVPSPIPPQFGQLKNLSYFWMRSANLIGNIPEWFADLPNLEHLDLAANHLQGGIPDGLLSHPKLQILYLFHNQLSGEIPKTVSALNLIEIDV GMNNLTGSVSEDFGKLKKLQILNLFSNKLSGGLPSSIALLPALKEMKLFTNNFTGELPTELGLHSKLEIFDIATNGFSGRLPENICARGVLEGLVASENN LSGEVPKSVGDCHHLKTIQLYNNNFSGELPPGVWRLVNMTYLMLSDNSFSGPLPSSIAWNLSRLEIHNNKFSGPIPKGVADWKGLVVFKASNNQLSGEIP VELTSLSRLITLLLDGNQLSGKFPSQIISWKSLSSLHLSRNKLSGPIPPAVGELQDILDLDLSGNQFSGEIPNEMNNLKLTALNLSSNQLTGRIPNNYNN LAYENSFLDNSNLCAVNPVLNLPDCRNRGGINGSSGNRLSSKYLAMILALAVMVFLFAVLVTFSAIRDLRRKKQKRDLAMWKLTSFQRVDFTQANILASL NDSNLIGSGGSGKVYRIPLNREGHFVAVKRIWSDAKLDEKLEKEFAAEVQILGTIRHSNIVKLMCCISSDDSKLLVYEYMENNSLDGWLHGKKRAPEANS TPTGALDWPTRLQIAAGTAQGLSYMHHECSHPIIHRDVKSSNILLDSQFKARMADFGLAKMLTKSGEAHTMSAVAGSFGYFAPEYAYTTKVNEKIDVYSF GVVLLELVTGRQANSGGENTSLAEWAWKQVGEGNHPVEECLDQEIKKENSVEEMTTVFKLGLICTSTVPSSRPSMKEVVQVLRRLCPAENCNGEKRNNNS KNEREFDVAPLLGNGVTYLSSYRRSKKVGDVDVDIDDTYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	2.0	0.8869
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	3.7	0.8740
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	8.0	0.8799
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10011479 [exp]	14.5	0.9012
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	16.9	0.8613
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	17.7	0.8839
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	18.5	0.8754
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	20.4	0.8771
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	21.0	0.8564
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	24.4	0.8373

Compare expression of checked genes

Lus10006028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.