Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32850 894 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 890 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT1G17980 691 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT3G06560 291 / 8e-90 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005490 [exp] 1258 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 819 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 817 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10021643 [exp] 731 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10034723 [exp] 721 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 708 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 680 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057200 [exp] 1031 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.006G235400 [exp] 1027 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.015G043200 [exp] 759 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.008G102500 [exp] 309 / 8e-97 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain CL0260 [flax] [poplar] PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10006029 pacid=23146584 polypeptide=Lus10006029 locus=Lus10006029.g ID=Lus10006029.BGIv1.0 annot-version=v1.0 ATGGTGGATTCGCAAGCTCCTAAAACACCCAAGAAAAAATACGGCATTACCAATCCAATCTCTCTTGCTGGCCCCACAGACGCTGATCTTCACCGCAATT CTGATTTGGAGAAGTTTTTGGTTGATTCTGGGCTGTACGAGGCCAAAGAAGAAACCGATAAGAGACAGGAGGTTCTTGGCAGGCTTGATCAGATTGTCAA AGCTTGGGTCAAGCAGTTGACACGCCAGAAGCGTTACACGGATCAGATGGTTGAAGAAGCAAATGCAGTTATTTTCACTTTCGGGTCTTACCGTTTGGGA GTACATGGACCTGGTGCAGACGTGGATACATTGTGCGTGGGCCCGTCTTATATTAATCGCGAGGAAGATTTCTTCATTATTTTACATGATTTGTTGGCTG ACATGGAGGAAGTCACTGAGCTTCAACCAGTTCCAGATGCTCACGTACCTGTAATGAAATTTAAGTTCTTGGGGATATCAATTGATCTACTTTATGCAAG TATTTCTCTCTTGGTTGTTCCGGAAGATCTGGACATCTCTAGTGGATCTGTGTTGCATGAGGTGGATGAGCAAACTGTTCGTAGCCTTAATGGGTGCAGA GTTGCAGATCAAATTCTCAAGCTTGTTCCCAATGTTGAGCATTTCCGGACTGCTCTCAGATGTTTGAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCTA ATGTCACTGGTTTCCTCGGTGGTGTGAATTGGGCTCTTCTTGTTGCCCGGGTGTGCCAGCTTTATCCCAATGCGATTCCTAGCATGCTAGTTTCTCGGTT TTTCAGAGTATATACTCAGTGGCGTTGGCCAAATCCTGTGATGTTGTGTTCAATAGAAGAAGATGAACTTGGGTTTCCAATATGGGACCCTCGGAAAAAC CCGCGAGACCGCTTTCATCATATGCCTATAATAACTCCAGCTTATCCTTGTATGAATTCTAGCTATAATGTTTCAATAAGTACTCTACGGGTTATGATGG AGCAATTTCAGTTTGGTAACAGGACATGCGAGGAGATTGAGCTGAGTAAGGCCCTATGGGGTGCACTATTTGAGCCTTACCTATTTTTTGAGTCATACAA AAACTACCTCCAAGTTGATATCATTGCAGCAGATACAGATGATTTGTTATCCTGGAAAGGTTGGGTTGAGTCACGGCTGAGACAACTTACATTAAAAATA GAGCGAGATACAACTGGCATGCTGCAGTGCCATCCTTATCCATACGAGTATATGGACTTGTCTAGGCAATGCCCACATTGTGCTTTCTTCATGGGCTTGC AGAGGAAAGAGGGAATAAGTGGTCAAGAAGGCCAACAGTTTGATATAAGGGGAACAGTTGATGAATTCAGGCAAGAGATAAACATGTACATGTTTTGGAA ACCAGGAATGGAAGTTTATGTTTCTCATGTTCGCAGAAAGCAGCTCCCTTCTTTTGTTTTTCCTGAAGGACATAGACGCTCTCGACCGTCAAGGCATTTA AGCCTGTTTGATGGAAAAGCTAATGATGATGTTGGAAAGTCCAGATCTGGGTCCATTGAAAGACGTCTGAAGAGAAAAAATGATGATGGAATTGCAGATG AAAGACGAGATAAGCGTGCCTCAATGAGCCCACAGAGAATGATGTCTGTTTCTCCAGAAAGCTGTACTAATAGCTTAATTGATGGTGCTAAATTGGGCTG TTCACCTCTTGGTGATATTGATAGGACTACCCGGGTGAGTTCATGTAGTGGGCAGGTCGATGGTGAGGTAAGAAATATTTTGATTGGTGCAGAGGGTGGG TGTTCCCTAAGTAGAAGAGGTTCCATGGAGGAGTGTAATTCGTCTTTGGCTATAAATTATCCAGAGCCAATGGAGTTGGAGGCTAAGCAGCAGCATTGTC CCGAGCCATGTGATAGGCCAGATTTTGCAACTGGAGGTATCCATTTGGCTGGATCCAGTGAATACAGAGTTGGGGAAGTTGGATCAGGTTTGAAAGATGT TACTGCAAATGAATCTTCTGACGGACTCTTAAATTGGACAGGCGATGTTATCGAGATTGGAAGAGAACCAGTTGAGCAGTGTAATCAAAGAGCAGTTGTA GGACTCAGTGAAACTGTAGTGTGCTCGAGCTCCGGCAATCAGAAGCTAAACTGTGAGGGTGAAGCTGCTGATGTGGGTTCAGTTCTGGAAAGAGGTTGTT TGAATGACAGTGGATTTGCAAACGGCGTGCCTGAAGAACTAGAGTGCAACACTGTGGTCGGGACAGCTATGCTATCTCAAGATGGATCGAGGTGCAAAGG CCGGGGATGA
AA sequence Show only first row Show all	>Lus10006029 pacid=23146584 polypeptide=Lus10006029 locus=Lus10006029.g ID=Lus10006029.BGIv1.0 annot-version=v1.0 MVDSQAPKTPKKKYGITNPISLAGPTDADLHRNSDLEKFLVDSGLYEAKEETDKRQEVLGRLDQIVKAWVKQLTRQKRYTDQMVEEANAVIFTFGSYRLG VHGPGADVDTLCVGPSYINREEDFFIILHDLLADMEEVTELQPVPDAHVPVMKFKFLGISIDLLYASISLLVVPEDLDISSGSVLHEVDEQTVRSLNGCR VADQILKLVPNVEHFRTALRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEDELGFPIWDPRKN PRDRFHHMPIITPAYPCMNSSYNVSISTLRVMMEQFQFGNRTCEEIELSKALWGALFEPYLFFESYKNYLQVDIIAADTDDLLSWKGWVESRLRQLTLKI ERDTTGMLQCHPYPYEYMDLSRQCPHCAFFMGLQRKEGISGQEGQQFDIRGTVDEFRQEINMYMFWKPGMEVYVSHVRRKQLPSFVFPEGHRRSRPSRHL SLFDGKANDDVGKSRSGSIERRLKRKNDDGIADERRDKRASMSPQRMMSVSPESCTNSLIDGAKLGCSPLGDIDRTTRVSSCSGQVDGEVRNILIGAEGG CSLSRRGSMEECNSSLAINYPEPMELEAKQQHCPEPCDRPDFATGGIHLAGSSEYRVGEVGSGLKDVTANESSDGLLNWTGDVIEIGREPVEQCNQRAVV GLSETVVCSSSGNQKLNCEGEAADVGSVLERGCLNDSGFANGVPEELECNTVVGTAMLSQDGSRCKGRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	0	1
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	1.4	0.9145
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	1.7	0.9046
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	2.0	0.9051
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	2.2	0.8923
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	3.5	0.9007
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	4.0	0.8868
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	5.2	0.8852
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	5.3	0.8522
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10033300 [exp]	5.9	0.8424
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	5.9	0.8868

Compare expression of checked genes

Lus10006029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.