Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 121 / 9e-31 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007175 [exp] 327 / 4e-110 AT5G27260 67 / 2e-12 unknown protein Lus10004350 [exp] 135 / 1e-35 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10035428 [exp] 107 / 2e-27 ND / Lus10025132 [exp] 103 / 1e-25 AT5G28950 55 / 1e-09 unknown protein Lus10007133 [exp] 100 / 3e-24 AT5G27260 46 / 8e-06 unknown protein Lus10002465 [exp] 57 / 2e-09 ND 58 / 4e-10 Lus10032348 [exp] 45 / 5e-05 AT5G27260 52 / 2e-07 unknown protein Lus10002982 [exp] 0 / 1 AT4G17260 198 / 6e-64 Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122400 [exp] 128 / 3e-33 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 123 / 2e-32 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.003G111201 [exp] 121 / 2e-31 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10006030 pacid=23146585 polypeptide=Lus10006030 locus=Lus10006030.g ID=Lus10006030.BGIv1.0 annot-version=v1.0 ATGGTGTCCACGCCGGTCCAGTCGATGGGGACCGATTATAGAAAAAAAAAATTAACCAAGCGCTTCAGAGAACCGACTAGGCGACTCTCTCTACTCATAC AAGCGCTCCATCACCAAGATCTTCATCATCGGCGTCGGAAACGTCGGCATGGCCATCACCTAGACCATTCTCACTCAGGACCTCGCCAACGAGATCGCCC TCGACGATGCCAACCACGACAAGCTCCATGGCAAGATGCTCGACTTCCAGCACGCTGTCACCTTCCTCACCTACACCAAGATCCTCGCCTCCATCGACTC CTCCGCCACCACCGGATCCGCATCTTCAAGGCGGTCCCTTTCCTGGCCAAGCACTCTCGCCACACCATTCTATTAATTGTCTGCAACCCCGTCGATTTCC TCACCTTTGTCGCATGGAAGCTCTCTGGCTGCCCCTGGAATCGGGTCATTAGGTCGGGTACTAATATGGATAGCTCTCGATTCAGGTTCCTGATCGCTGA CCATCTCGACGTCAATGCCGAGGATGTCCAGACATACATAGTGGGGGAGCACGATGACAAACTCTGTGGCGTTGTGGTCGAGCATAAGCGTGGGAGGAGT GCGATAATAGAGAAGGATACGCTGGAGAAGAAGAAGGTCGGGGAGGGCGTGTGGAATTTATCGTTTAAATTGACGAAAAACAACGATATTTCTCCGTTGA GGGCTTCTTCGAAATCACGCCAAGGAGCTGTGGGAGCTATTGAGAATGCTCCTCCCATATCAGAAAGTGGATTCAACAATGTTAATGAGGTGGATTCTAG TTTGCTGAATGAAGAGGAAATGGCTAGATACATGCAAAATGCGATTAATGAGGTTGTTGACATGCCAACACCAAATGGGGTTCGGAATGAACAACCAGAA ATCTCTGCTACGGGTGATAATTCAGGGAATGGTCGTTCAAGAAGGCCTACTGCTAGACGTATTCTGCTAGAGAGTTCAGTTACTAATTTACCTAGTGAGA TTTCAGAGATTAGGCTAGCTATTGATAGAGCTATTGATGTTATGGTCAATAGGATGCTTGGGGAAGATGAGAACCACACCAATATGCGACATCAAATCAT GATCGACTTGGAAAGTTTGCCTGGGCTCACTCGCTACCAAGTCATTGATGTTGTTTCTGCTCTCAATCGAGATGAGAACCATCGCAATTTGCAGTTATTC TACAAGCTGAGTACTACAGATGACAAGCTGTACTTCATCAAGAAGATGTTAAGGAGGGAGGAAATTTGA
AA sequence Show only first row Show all	>Lus10006030 pacid=23146585 polypeptide=Lus10006030 locus=Lus10006030.g ID=Lus10006030.BGIv1.0 annot-version=v1.0 MVSTPVQSMGTDYRKKKLTKRFREPTRRLSLLIQALHHQDLHHRRRKRRHGHHLDHSHSGPRQRDRPRRCQPRQAPWQDARLPARCHLPHLHQDPRLHRL LRHHRIRIFKAVPFLAKHSRHTILLIVCNPVDFLTFVAWKLSGCPWNRVIRSGTNMDSSRFRFLIADHLDVNAEDVQTYIVGEHDDKLCGVVVEHKRGRS AIIEKDTLEKKKVGEGVWNLSFKLTKNNDISPLRASSKSRQGAVGAIENAPPISESGFNNVNEVDSSLLNEEEMARYMQNAINEVVDMPTPNGVRNEQPE ISATGDNSGNGRSRRPTARRILLESSVTNLPSEISEIRLAIDRAIDVMVNRMLGEDENHTNMRHQIMIDLESLPGLTRYQVIDVVSALNRDENHRNLQLF YKLSTTDDKLYFIKKMLRREEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	0	1
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	1.0	0.8556
AT2G42040			unknown protein		Lus10021062 [exp]	2.8	0.7053
AT2G43620			Chitinase family protein (.1)		Lus10020338 [exp]	3.0	0.6780
AT1G52490			unknown protein		Lus10022937 [exp]	6.2	0.7090
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	9.3	0.7149
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10029070 [exp]	10.6	0.6845
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	13.6	0.6863
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	14.0	0.6887
					Lus10029472 [exp]	17.4	0.6790
					Lus10008904 [exp]	20.2	0.6780

Compare expression of checked genes

Lus10006030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.