Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25870 662 / 0 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005489 [exp] 866 / 0 AT2G25870 689 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10038133 [exp] 700 / 0 AT2G25870 671 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10005169 [exp] 645 / 0 AT2G25870 614 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G057500 [exp] 729 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G235301 [exp] 0 / 1 AT2G25870 0 / 1 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02130 [flax] [poplar] UPF0054 Uncharacterized protein family UPF0054 CL0137 [flax] [poplar] HAD PF08282 [flax] [poplar] Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10006031 pacid=23146588 polypeptide=Lus10006031 locus=Lus10006031.g ID=Lus10006031.BGIv1.0 annot-version=v1.0 ATGAAGCCGGCAGTAAACGAGGTTTGTGGAGCTGGACGGAGAGGGTACCGGAAAATGAGGAGACGAGCGACGGCGAAGACCAAGCAGAAGGAATTGGAGC TCAATGTTAGCATTTGCATTGAAGATGGCCTGCCTGATGATTCTGAAATCTTGAGTATTGCCGAGTTGCTTCGGCTTAACGTGCCAATGGCAATAAAGTT GGTTCTGGACGGCTTGAAAGACTCTCCCTACAAGACAAGAGATACAACTATCACTGATGTTGGGGGGTTTGAGAGTATCGAGTTGTCCGTGTTGCTCTGT AATGACAAATTCATCAGGAAGCTCAATAAAGAATGGAGAGATGAAGACCATGCTACTGATGTTCTCTCTATGTCACAGCATGTTCCTCAACTTCACCTCC CTGTTCTTATTCTTTGCGACATGGTAATTTCTGTGGAGACAGCTGCACGTCAAGCTGAAGAAAGAGGTCATACACTTGTGGATGAGATTCGCATTCTCCT GGTCCACGGGTTATTGCATCTTATCGGATTTGATCACGAGATCAGTGAAGAAGCTGAAGCTGAAATGGAGAAAGAAGAGCAAGTTCTTCTCAAGAGTCTT GGGTGGAGAGGAAAAGGACTTATTCAAAGTGCATGTGATGGAAGTTCTAAAACTGATCCTGATTCAGAAACTTTGGATGATAGGAAGAAAGAAGGAAGCC TTCGGTTCTACAAACCAAAATTCAAGTATATCTTCTGCGACATGGATGGAACTTTGCTTAACAGCCAAAGTCAAGTTTCAACAACAAATGCTACTGCGTT GAAAGAAGCTATATCAAGAGGAGTGAAGATAGTGATTGCAACTGGAAAGGCTCGTCCAGCTGTGATAAGTATCTTGAAGACAGTAGGCCTAGCTGGTAGA GATGGTATTATTTCAGAGTCGTCCCCTGGTGTTTTCTTGCAGGGGTCACTTGTGTATGGTAGACAGGGACGAGAGATCTTAAGAAGAAACTTAGATCCAA GCGTATGCAAGGAGGTGTGCATGTATTCTTTGGAGAATAAGATTCCTCTTATTTCATTCAGCAATGATCGTTGCTTAACACTGTTTAATCATCCCCTTGT TGATACATTGCATATAGTTTACCAAACACCGCAGGCTGTAGTCATGCCATCAGTAAATCATCTAGTGGATGCAGCTGACATACAGAAACTGTTATTTATA GATGATGCTGATAGAATAGCTGCGGAACTGAGGCCGTACTGGTCAAAGGCAATAGGAAGTCGTGGCAATGTTGTCCAAGCTGTCCCACACATGCTTGAGA TTGTGCCAGTGGGAACATCGAAAGGGAGTGGGGTAGAAATTCTCCTTGATCATTTAGGGGCGAAACCAGAGGAGATAATGGCGATAGGAGACGGAGAGAA TGACATTGAGATGCTGGAATTGGCTGCTCTTGGAATTGCTCTCAGCAATGGTGCAGAGAAGACAAAAGCCGTGGCCAACATAATAGGTACTAGTAATGAT GAAGATGGGGTAGCTGATGCTATATATCGGTATGCGTTCTGA
AA sequence Show only first row Show all	>Lus10006031 pacid=23146588 polypeptide=Lus10006031 locus=Lus10006031.g ID=Lus10006031.BGIv1.0 annot-version=v1.0 MKPAVNEVCGAGRRGYRKMRRRATAKTKQKELELNVSICIEDGLPDDSEILSIAELLRLNVPMAIKLVLDGLKDSPYKTRDTTITDVGGFESIELSVLLC NDKFIRKLNKEWRDEDHATDVLSMSQHVPQLHLPVLILCDMVISVETAARQAEERGHTLVDEIRILLVHGLLHLIGFDHEISEEAEAEMEKEEQVLLKSL GWRGKGLIQSACDGSSKTDPDSETLDDRKKEGSLRFYKPKFKYIFCDMDGTLLNSQSQVSTTNATALKEAISRGVKIVIATGKARPAVISILKTVGLAGR DGIISESSPGVFLQGSLVYGRQGREILRRNLDPSVCKEVCMYSLENKIPLISFSNDRCLTLFNHPLVDTLHIVYQTPQAVVMPSVNHLVDAADIQKLLFI DDADRIAAELRPYWSKAIGSRGNVVQAVPHMLEIVPVGTSKGSGVEILLDHLGAKPEEIMAIGDGENDIEMLELAALGIALSNGAEKTKAVANIIGTSND EDGVADAIYRYAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	0	1
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10010424 [exp]	1.0	0.8954
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10017795 [exp]	1.4	0.8810
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10006483 [exp]	3.3	0.8470
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	3.9	0.8687
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	10.8	0.8624
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	15.9	0.8583
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	17.3	0.8169
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	19.8	0.8197
AT3G49810			ARM repeat superfamily protein...		Lus10010598 [exp]	20.1	0.8302
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	21.9	0.7970

Compare expression of checked genes

Lus10006031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.