Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 743 / 0 PFK3 phosphofructokinase 3 (.1) AT4G32840 738 / 0 PFK6 phosphofructokinase 6 (.1) AT4G29220 729 / 0 PFK1 phosphofructokinase 1 (.1) AT5G56630 724 / 0 PFK7 phosphofructokinase 7 (.1) AT5G61580 695 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 485 / 3e-170 PFK2 phosphofructokinase 2 (.1) AT2G22480 413 / 1e-140 PFK5 phosphofructokinase 5 (.1) AT1G20950 78 / 3e-15 Phosphofructokinase family protein (.1) AT1G76550 77 / 1e-14 Phosphofructokinase family protein (.1) AT4G04040 73 / 1e-13 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005488 [exp] 860 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10043044 [exp] 739 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 736 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 718 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 505 / 1e-177 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 405 / 4e-137 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 401 / 8e-136 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 194 / 3e-60 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10025167 [exp] 82 / 3e-16 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 751 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 737 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 701 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 506 / 6e-178 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 377 / 5e-131 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 382 / 3e-128 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 353 / 1e-121 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 202 / 4e-63 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 89 / 8e-22 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 84 / 6e-17 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10006032 pacid=23146579 polypeptide=Lus10006032 locus=Lus10006032.g ID=Lus10006032.BGIv1.0 annot-version=v1.0 ATGCAAGAGGCGGAAACGGTGGGCGACGCTGCGGTTTTGCCAACACAAGTGGAAGAGACGTCTCTCCCCCCCCCCCGTTTGGCCACTTACCCAAATCCCT TGCAAGTCAATCCCGCTTACTCTGTTGTCAAGCAATACTTCGTCGATGTGGATGACACGGTTGCTCAAAAGGTTGTTGTTCACAAGAATGGTCCTAGAGG AACCCACTTCCGTCGAGCTGGACCTCGCCAAAAGGTGTTCTTTAAGTCTGATGAAGTCCACGCTTGCATTGTCACCTGTGGTGGTTTGTGCCCTGGCCTT AACACCGTCATCAGGGAGATTGTTTGCGGCCTTCATTATATGTATGGTGTCACCAGAATCATTGGTATTGACGGAGGCTACAGGGGATTCTATTCCAAAA ATACTATTGATTTGACTCCCAAGGTTGTCAATGACATCCATAAACGTGGGGGTACATTCCTCGGGACATCCAGAGGCGGACATGACACATCCAAGATAGT TGACAGCATTGAGGATCGTGGGATTAATCAGGTCTACATCATCGGTGGCGATGGAACTCAAAAGGGAGCAGCAGCTATTTACGAGGAAATCAGGCGACGC GGTCTTAAAGTTTCAGTTGCTGGAATACCTAAGACCATTGACAATGACATTCCGGTTATTGACAAGTCGTTTGGTTTTGATACTGCGGTAGAGGAGGCAC AGCGTGCTATCAATGCAGCACATGTTGAAGCTGCGAGTACCGAAAATGGTATTGGTCTTGTGAAACTGATGGGGCGAGATAGTGGTTTCATTGCTATGTA CGCTACTCTTGCCAGCCGAGACGTGGATTGTTGTTTGATTCCAGAGTCGCCTTTCTATTTAGAAGGAAAAGGTGGAGTTTTCGAGTTCATAAAAAAACGG CTAAAAGAAAATGGGCACATGGTCATTGTAATTGCTGAAGGAGCAGGGCAAGATCTTCTTACAGAAAGCCTGCGGTCCATGGATCAGCAAGATGCTTCAG GAAACAAGCTACATCAAGATGTTGGATTTTGGATATCTGGGAGGATCAAGGATCATTTTGCAAAAGAACACAAGATGGCCATCAATCTCAAATACATAGA TCCTACATACATGATCCGGGCAATTCCGGGTAATGCATCTGATAATGTATACTGCACACTCCTTGCACAGAGTGCAGTACATGGAGCAATGGCAGGATAT ACAGGCTTCACTGTTGGACCTGTTAACGGACGACATGCTTACATCCCCTTTAATCGCATCACTGAGAAGCAGAACAAGGTGGTGATCACAGACAGGATGT GGGCTAGGCTTCTATCCTCAACTAACCAACCTAGCTTTTTGTGA
AA sequence Show only first row Show all	>Lus10006032 pacid=23146579 polypeptide=Lus10006032 locus=Lus10006032.g ID=Lus10006032.BGIv1.0 annot-version=v1.0 MQEAETVGDAAVLPTQVEETSLPPPRLATYPNPLQVNPAYSVVKQYFVDVDDTVAQKVVVHKNGPRGTHFRRAGPRQKVFFKSDEVHACIVTCGGLCPGL NTVIREIVCGLHYMYGVTRIIGIDGGYRGFYSKNTIDLTPKVVNDIHKRGGTFLGTSRGGHDTSKIVDSIEDRGINQVYIIGGDGTQKGAAAIYEEIRRR GLKVSVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAASTENGIGLVKLMGRDSGFIAMYATLASRDVDCCLIPESPFYLEGKGGVFEFIKKR LKENGHMVIVIAEGAGQDLLTESLRSMDQQDASGNKLHQDVGFWISGRIKDHFAKEHKMAINLKYIDPTYMIRAIPGNASDNVYCTLLAQSAVHGAMAGY TGFTVGPVNGRHAYIPFNRITEKQNKVVITDRMWARLLSSTNQPSFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	0	1
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	1.0	0.9704
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	2.4	0.9609
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	3.0	0.9450
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	4.2	0.9365
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	4.2	0.9602
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	6.0	0.9557
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	7.7	0.9405
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	8.0	0.9392
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	8.1	0.9411
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	10.5	0.9421

Compare expression of checked genes

Lus10006032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.