Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32830 490 / 2e-176 ATAUR1 ataurora1 (.1) AT2G25880 481 / 3e-173 ATAUR2 ataurora2 (.1.2) AT2G45490 346 / 6e-120 ATAUR3 ataurora3 (.1) AT1G30270 164 / 7e-47 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 163 / 3e-46 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G21326 161 / 8e-46 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G48490 166 / 9e-46 Protein kinase superfamily protein (.1.2.3) AT5G35410 160 / 2e-45 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G10930 160 / 2e-45 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G26980 157 / 6e-45 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005487 [exp] 520 / 0 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10020580 [exp] 339 / 6e-117 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 336 / 7e-116 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10042816 [exp] 161 / 8e-46 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 160 / 2e-45 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042229 [exp] 160 / 2e-45 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10030182 [exp] 160 / 2e-44 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 160 / 3e-44 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034212 [exp] 155 / 6e-44 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G235000 [exp] 497 / 2e-179 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 491 / 4e-177 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G080500 [exp] 346 / 8e-120 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.006G062800 [exp] 163 / 1e-46 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 163 / 1e-46 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.013G156000 [exp] 162 / 2e-46 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 161 / 5e-46 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 160 / 2e-45 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G119200 [exp] 160 / 2e-45 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.016G138400 [exp] 158 / 2e-44 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006033 pacid=23146577 polypeptide=Lus10006033 locus=Lus10006033.g ID=Lus10006033.BGIv1.0 annot-version=v1.0 ATGGCGATTGCTCCTCCTGACACCACCCATCCCCAGCATCAGCACCACCAGGATCCTTGTCCTGAAGAATCGGCCATGTCCGGTGATAACAACAACAAGG CCAGGAGATGGACGCTCAACGATTTCGACATTGGCAAGCCTCTCGGCCGCGGAAAATTCGGCCACGTCTACCTCGCTCGTGAAAAGAGGAGCAATCACGT TGTGGCTTTGAAAGTGCTGTTCAAGAGCCAACTCCAACAATCGCAGGTGGAGCATCAACTCCGCCGTGAAGTTGAAATTCAAAGCCATCTCCGCCATCCC AATATCCTCCGTCTCTATGGCTACTTTTACGATCAGAAGCGAGTCTACTTGATATTGGAGTACGCAGCCAAAGGTGAACTCTACAAAGACCTTCAGAAGT GCAAATACTTCAGTGAACGGCGTGCAGCTACTTATGTAGCTTCATTGGCCAGGGCTCTGATATATTGCCATGGGAAGCATGTCATCCATAGAGATATTAA ACCAGAGAACCTGTTGGTTGGTGCCCAGGGAGAGCTAAAGATTGCAGATTTTGGTTGGTCCGTGCACACATTCAACCGAAGGAGGACAATGTGCGGTACA TTGGACTACCTGCCACCTGAAATGGTTGAAAGTGTTGAACATGATGCTAGTGTTGATATTTGGAGCCTGGGTGTGTTGTGTTATGAGTTCCTGTACGGCG AGCCCCCTTTTGAGGCAAGGGAACACTCCGACACGTACAGAAGAATTGTGCAAGTGGACCTCAAATTTCCCCCCAAGCCTATTGTATCTGCCTCTGCAAA GGATCTTATAAGTCAGGGTGTTGTGACTGGCCTCAATATGGCTTGGGAGAGGTTACCGGAGAATACAGGTGCAACTCAATTGAAGTTCATATGTCAGAGG ACTGGGGAGATTCACCAGCACTCTGCTATAGTTGGTCAGATTCATGAATTGATGAGGAGGACGTGA
AA sequence Show only first row Show all	>Lus10006033 pacid=23146577 polypeptide=Lus10006033 locus=Lus10006033.g ID=Lus10006033.BGIv1.0 annot-version=v1.0 MAIAPPDTTHPQHQHHQDPCPEESAMSGDNNNKARRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHVVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHP NILRLYGYFYDQKRVYLILEYAAKGELYKDLQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGT LDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGEPPFEAREHSDTYRRIVQVDLKFPPKPIVSASAKDLISQGVVTGLNMAWERLPENTGATQLKFICQR TGEIHQHSAIVGQIHELMRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	1.7	0.9825
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	2.8	0.9747
AT4G02800			unknown protein		Lus10000658 [exp]	3.5	0.9759
AT4G02800			unknown protein		Lus10014668 [exp]	3.5	0.9793
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	3.6	0.9618
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	4.6	0.9562
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	5.3	0.9614
AT3G15550			unknown protein		Lus10025757 [exp]	6.0	0.9701
AT5G07670			RNI-like superfamily protein (...		Lus10031742 [exp]	7.7	0.9535
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	8.1	0.9720

Compare expression of checked genes

Lus10006033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.