Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028091 [exp] 350 / 3e-122 ND / Lus10010798 [exp] 283 / 6e-93 AT5G27260 61 / 5e-10 unknown protein Lus10022379 [exp] 268 / 3e-89 AT5G27260 74 / 1e-14 unknown protein Lus10004397 [exp] 262 / 5e-87 AT5G27260 77 / 6e-16 unknown protein Lus10018174 [exp] 235 / 2e-76 AT5G41980 68 / 1e-12 unknown protein Lus10022993 [exp] 187 / 1e-58 ND / Lus10026427 [exp] 154 / 2e-46 ND / Lus10034368 [exp] 150 / 4e-44 AT5G38900 147 / 2e-43 Thioredoxin superfamily protein (.1) Lus10022573 [exp] 127 / 8e-37 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006034 pacid=23146581 polypeptide=Lus10006034 locus=Lus10006034.g ID=Lus10006034.BGIv1.0 annot-version=v1.0 ATGCTTCAGTTTCATTTTCTTCTATGTCCTAACCAGTTGAGCAAGCAGATACAGGTTAATGCTATGGCGAACAATAGGGATTACAAAGTGTGGACTAAAG AGGAGGAACAAACCTTGGTGAGCTGTATGCAGGAGCTGGTCGAGAAGAATGTTGTACCAAATGGGAACTTCAAACTATCTGGCATCAAGAAGTTGGAGCG GATGATGCATATGAAGATTCCAAAATGCACCTTGTTGGCTGTTCCACATATCAAGTCCAAGGTCCGATATTTCAAGGATAAGTTCACTGCACTACTAGAA CTCCAGCAAGCTAGTGGATTTGGTTGGGATGATGCTCGTGGCTGCATAGTTGCAGATCCAGCCATCTTCGCTGGCTGGGTGAAGGTGATGGAAGATATCA TCAATCAAGGTATTGACCTGCATGCTACGGGACTGCAAGATGTTGAGGCTGAGATCACCTCCAAGCGAGGTCAACCAAAAGGGAAAGAGGTAGCTACTTC ATCTGGAAGTAAGCGAGGAAGGCAACAGGTTCAGGATGAGGAGCGTGCTCAGCTTCATGCCAATATCACCATCACCACCGAAAATATTTCAAGGATTGCT ACCAGCTACTGCTTTGAAACCGAACTAGCAATGAAACGGCAGGTGTTGTATGAGGAGCTTGCAAAGTTCACCACGCTCAGTTTAAGCCAGAAAACTAAGG CACTGAGGCACCTCAATCGTGATGATGGTGATGCTATTACCTACTTTCAACTCCCAACTGACGAGGAGAGGCTGGAATTTGTTTGGACGATTCTCGAGTA A
AA sequence Show only first row Show all	>Lus10006034 pacid=23146581 polypeptide=Lus10006034 locus=Lus10006034.g ID=Lus10006034.BGIv1.0 annot-version=v1.0 MLQFHFLLCPNQLSKQIQVNAMANNRDYKVWTKEEEQTLVSCMQELVEKNVVPNGNFKLSGIKKLERMMHMKIPKCTLLAVPHIKSKVRYFKDKFTALLE LQQASGFGWDDARGCIVADPAIFAGWVKVMEDIINQGIDLHATGLQDVEAEITSKRGQPKGKEVATSSGSKRGRQQVQDEERAQLHANITITTENISRIA TSYCFETELAMKRQVLYEELAKFTTLSLSQKTKALRHLNRDDGDAITYFQLPTDEERLEFVWTILE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10006034 [exp]	0	1
AT5G27260			unknown protein		Lus10010798 [exp]	1.0	0.8307
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	2.2	0.6615
AT3G62010			unknown protein		Lus10038011 [exp]	4.0	0.7070
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	14.8	0.6885
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	16.5	0.6408
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	17.7	0.6243
AT4G20190			unknown protein		Lus10036246 [exp]	18.5	0.5848
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	19.8	0.6464
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	20.1	0.6642
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	34.4	0.6501

Compare expression of checked genes

Lus10006034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.