Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20890 144 / 1e-42 unknown protein AT1G76480 141 / 4e-41 unknown protein AT4G20910 54 / 4e-08 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005486 [exp] 182 / 2e-57 AT1G20890 146 / 3e-44 unknown protein Lus10038546 [exp] 101 / 5e-24 AT4G20910 806 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10023257 [exp] 98 / 8e-23 AT4G20910 818 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234800 [exp] 160 / 9e-49 AT1G20890 174 / 4e-55 unknown protein Potri.011G163600 [exp] 81 / 5e-17 AT4G20910 776 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Potri.001G465500 [exp] 77 / 7e-16 AT4G20910 857 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006035 pacid=23146569 polypeptide=Lus10006035 locus=Lus10006035.g ID=Lus10006035.BGIv1.0 annot-version=v1.0 ATGATGGCTTCAATTGGGTACACGTGGAGGTCTAGAGATATTTTTCATGAGAAGTTAACTATGCAAACCTATCACAGGATACTACCTAGCACATTTCCAA GTGGAACTTGCAAGCTGTCAAGGGATGCAATGATTCCAGTAGAATTGCATTCGCAGTTTACAACAGAAGCTTATTGGAGCAATGTATGGGTTAACAAGGG AGGTAATGCTGAATTCAAGAGACATTACTGGAGACAACCATTTAAATCGGCTGTGAAGCGCGAGATGGAGAGTTCTAGTAGGCTGCTAGTGATGCTTCGC GCTCATTGCTTTGCCCTCTGGTTTCAGCTTCATTGCTGGCTACCCAGTTTTCACATATGGCAACTTCATGAAACTCTTCCCTTACAAAAGGGTTCCCGCC TTTATGAACTGCAAGGCCTCAAATCAAACTCTTGGTATGAAGTCAAGATATCTTATCCAGCTTCTATACCCGCCAGCTTCCCTATACAACTCAAGAAGGA TGTTTCTGATTTGGGGTCCAATCGGAATAGAAGATTGCTAAATACAGAGAAATTGATTTTCAAGGCTGATAGTTTCAATGGCAGTCCGCCTGAGGGAGTT GTTGCCATACCAAATGTACCAGAGAGGCAAGCAATCATCTTCAACATGGTATGTGATGAGCTGTTGATGGGTATCCCACACAAGGTTTGGTGGGTGGGAG TTTTGGTGTTGCTGTGTTTGGTGGCAGCATTCATCACTCCTCGTTATCTTCCACCTTACATGTTCCCAAAGAATGGAACACATGAGAACGTTCCCAAACA ATCTTAG
AA sequence Show only first row Show all	>Lus10006035 pacid=23146569 polypeptide=Lus10006035 locus=Lus10006035.g ID=Lus10006035.BGIv1.0 annot-version=v1.0 MMASIGYTWRSRDIFHEKLTMQTYHRILPSTFPSGTCKLSRDAMIPVELHSQFTTEAYWSNVWVNKGGNAEFKRHYWRQPFKSAVKREMESSSRLLVMLR AHCFALWFQLHCWLPSFHIWQLHETLPLQKGSRLYELQGLKSNSWYEVKISYPASIPASFPIQLKKDVSDLGSNRNRRLLNTEKLIFKADSFNGSPPEGV VAIPNVPERQAIIFNMVCDELLMGIPHKVWWVGVLVLLCLVAAFITPRYLPPYMFPKNGTHENVPKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76480			unknown protein		Lus10006035 [exp]	0	1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	1.4	0.9446
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	1.7	0.9407
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	2.4	0.9458
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	2.8	0.9367
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	4.2	0.9264
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	4.4	0.9071
					Lus10014678 [exp]	5.0	0.9366
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	5.3	0.9213
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	6.0	0.8952
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	6.9	0.9200

Compare expression of checked genes

Lus10006035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.