Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11670 643 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT5G25880 633 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT1G79750 628 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT2G19900 622 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT4G00570 284 / 4e-90 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 284 / 8e-90 NAD-ME1 NAD-dependent malic enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005484 [exp] 683 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10025823 [exp] 622 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10012964 [exp] 613 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10043025 [exp] 600 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10011125 [exp] 572 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10037561 [exp] 572 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 570 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005483 [exp] 549 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10038278 [exp] 506 / 5e-179 AT1G79750 569 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236500 [exp] 670 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G046600 [exp] 659 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 637 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 635 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 629 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G135300 [exp] 291 / 2e-92 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 290 / 2e-92 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 289 / 7e-92 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 287 / 7e-91 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10006036 pacid=23146587 polypeptide=Lus10006036 locus=Lus10006036.g ID=Lus10006036.BGIv1.0 annot-version=v1.0 ATGACTTCCGTGAATGAAGGTAATGATTCGACGGAGAAGATCGTTAATGGCGTCGAGGGTGGAGGCGTTGAGGATGTGTACGGTGAGGATCATGCCACGG AGGAGCAGTTTCTCACCCCTTGGGCCGTCTCCATTGCTAGTGGCTACAATTTGATGAGGGATCCCAGGCATAACAAAGGGACTGCATTCACTGAGAAAGA GAGGGATGCTCATTACCTGAGAGGTCTTCTTCCTCCAGCTACCTTCTCTCAGGACCTTCAGGAGAAAAGATTGATGCACAACCTTCGCCAGTTTGAAGTT CCTCTTCAGAGATACATGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTATTCTACAAACTCCTGATTGATAACGTGGAAGAACTTCTGCCAGTTG TGTATACTCCCACAGTTGGGGAGGCTTGCCAAAAATATGGCAGCATTTTCAGGCGTCCCCAGGGCCTCTACATCAGTTTGAAAGAGAAGGGAAAAATTCT TGAAGTGTTGAAGAACTGGCCGGAGAGAAATATTCAAGTAATTGTTGTTACCGATGGCGAGCGAATTCTTGGGCTTGGGGATCTTGGCTGCCAGGGAATG GGGATTCCTGTGGGGAAGCTTTCTTTGTACACAGCACTAGGAGGAATCCGTCCATCAGCATGCCTGCCAATTACAATTGATGTTGGTACAAATAATGAGA AACTGTTGAATGATGAGTTCTACATTGGACTTAAACAAAGGAGGGCAACAGGACAGGAGTATGCTGAACTTCTGGAAGAGTTCATGAGTGCAGTTAAGCA AAATTATGGGGAGAAAGTCTTGATACAGTTTGAAGACTTTGCAAATCATAATGCATTTGACCTCCTGGAAAGGTACAGGCGAAGCCATCTTGTTTTCAAT GATGATATACAGGGAACAGCATCTGTAGTCCTGGCAGGGCTTCTTGCTGCTCTGAACTTGGTTGGAGGAACCTTAGCAGACCATACGTTCCTCTTCCTGG GAGCTGGCGAGGCCGGTACTGGCATAGCTGAGCTTATCGCTCTGGAGATTTCCAAGCAGATCAAAGCTCCCGTAGAAGAGACCAGGAAGAAGATTTGGTT GGTGGACTCGAAGGGGCTCATCGTCAGTTCTCGCAAGGAGTCCCTTCAGCATTTCAAGAAACCCTGGGCTCATGGCCACGAACCTGTTAAGAATCTCCTG GATGCTGTTAAGGTATGGAAATTAGTCACCTCTTTGTAA
AA sequence Show only first row Show all	>Lus10006036 pacid=23146587 polypeptide=Lus10006036 locus=Lus10006036.g ID=Lus10006036.BGIv1.0 annot-version=v1.0 MTSVNEGNDSTEKIVNGVEGGGVEDVYGEDHATEEQFLTPWAVSIASGYNLMRDPRHNKGTAFTEKERDAHYLRGLLPPATFSQDLQEKRLMHNLRQFEV PLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGM GIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNDEFYIGLKQRRATGQEYAELLEEFMSAVKQNYGEKVLIQFEDFANHNAFDLLERYRRSHLVFN DDIQGTASVVLAGLLAALNLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQIKAPVEETRKKIWLVDSKGLIVSSRKESLQHFKKPWAHGHEPVKNLL DAVKVWKLVTSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	1.0	0.9320
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	2.4	0.9132
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	3.7	0.8759
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	3.9	0.8971
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	4.6	0.9035
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	5.1	0.8664
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	5.5	0.8969
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	7.9	0.8860
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	8.1	0.8781
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	8.9	0.8938

Compare expression of checked genes

Lus10006036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.