Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 246 / 4e-79 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT2G19900 242 / 5e-78 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G25880 241 / 8e-78 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT5G11670 232 / 3e-74 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT4G00570 103 / 3e-26 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 96 / 1e-23 NAD-ME1 NAD-dependent malic enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005483 [exp] 294 / 1e-99 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10012964 [exp] 263 / 2e-86 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 257 / 4e-84 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10043025 [exp] 259 / 5e-84 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10025823 [exp] 244 / 5e-78 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 234 / 2e-74 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 234 / 3e-74 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 226 / 2e-72 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10034963 [exp] 163 / 6e-49 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236500 [exp] 265 / 1e-86 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G046600 [exp] 261 / 2e-85 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.001G189700 [exp] 253 / 1e-81 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G086700 [exp] 249 / 9e-81 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 250 / 2e-80 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G135300 [exp] 95 / 3e-23 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 95 / 4e-23 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 93 / 2e-22 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G079900 [exp] 85 / 1e-19 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10006037 pacid=23146568 polypeptide=Lus10006037 locus=Lus10006037.g ID=Lus10006037.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTCAACGAGAAACCCCTGATTCTTGCACTATCGAATCCCACTTCTCAATCAGAGTGCACAGCTGAGGAAGCTTACGCATGGAGCCAGGGTC GTGCTATTTTTGCGAGTGGAAGTCCATTTGACCCAGTTGAGCACAAAGGGAAAGTAATGGTGCCAGGACAGGCAAACAATGCTTACATATTCCCTGGGTT TGGTCTAGGGTTGATAATGTCTGGTGCAATTCGTGTGCATGATGACTTGCTCTTGGCAGCCTCGGAAGCATTGGCTGCCCAGGTAGAAGAGGAGCATTAC GAGAAGGGACTGATATACCCACCATTTACAAACATAAGGAAGATATCAGCAAACATTGCTGCAAAGGTTGCTGATAAGGCATATCAATTGGGTCTGGCGT CGCGTCTGCCTCGTCCTAAGGATCTGGTGAAGCATGCAGAGAGCTGCATGTACAGCCCCTTGTACAGAACTTATCGTTAA
AA sequence Show only first row Show all	>Lus10006037 pacid=23146568 polypeptide=Lus10006037 locus=Lus10006037.g ID=Lus10006037.BGIv1.0 annot-version=v1.0 MASFNEKPLILALSNPTSQSECTAEEAYAWSQGRAIFASGSPFDPVEHKGKVMVPGQANNAYIFPGFGLGLIMSGAIRVHDDLLLAASEALAAQVEEEHY EKGLIYPPFTNIRKISANIAAKVADKAYQLGLASRLPRPKDLVKHAESCMYSPLYRTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	0	1
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	3.3	0.9186
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10016649 [exp]	3.6	0.8831
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	3.7	0.9123
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	3.9	0.8971
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	7.7	0.8955
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10005484 [exp]	9.2	0.8556
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	9.9	0.8855
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	12.7	0.8899
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	14.4	0.8514
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	15.1	0.8840

Compare expression of checked genes

Lus10006037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.