Plant FIBer expression Database

Lus10006038 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15215 40 / 0.0001 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038276
[exp]
42 / 2e-05 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Lus10005480
[exp]
41 / 2e-05 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Lus10025826
[exp]
40 / 0.0001 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G046200
[exp]
104 / 9e-29 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Potri.001G189200
[exp]
38 / 0.0005 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
PFAM info
Representative CDS sequence
>Lus10006038 pacid=23146574 polypeptide=Lus10006038 locus=Lus10006038.g ID=Lus10006038.BGIv1.0 annot-version=v1.0
ATGGCTCGGCTCCGGACTAGAGAGAAACTCGTCTTCTCTGGCTTCACCAAGGCGGAGGCTGAAAAGATGGAGAAGTTGTTAGATGATTCTGTACAGCCTC
TCAACACGGAGCTTTTCAAGAAGCTAGCTAGAGGTTTCAATCAGTCTTCTGGTCGTGCTGGAAAACCTGCTGTCAAATGGACTGAGGTAGAAAGTTGGTT
CCAGAGTAGACAACAAGGACTTGTACCTCCGCTATGTTCTGCAACCAATGTTTCGAAAGATGGTTCAACGTCCCTGAGGGCTGGGCTTGCAAATGAGGCG
CATGATATTATCCAAAAAAAGCATACAGGTCATCCTTACTTCTTTGGGTTGCTCTAA
AA sequence
>Lus10006038 pacid=23146574 polypeptide=Lus10006038 locus=Lus10006038.g ID=Lus10006038.BGIv1.0 annot-version=v1.0
MARLRTREKLVFSGFTKAEAEKMEKLLDDSVQPLNTELFKKLARGFNQSSGRAGKPAVKWTEVESWFQSRQQGLVPPLCSATNVSKDGSTSLRAGLANEA
HDIIQKKHTGHPYFFGLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006038
[exp]
0 1
AT5G51140 Pseudouridine synthase family ... Lus10016743
[exp]
4.7 0.7689
AT5G04520 Protein of unknown function DU... Lus10017450
[exp]
15.8 0.6873
AT2G37025 TRFL8 TRF-like 8 (.1.2) Lus10026522
[exp]
21.8 0.7115
AT2G26590 RPN13 regulatory particle non-ATPase... Lus10040571
[exp]
23.5 0.7411
AT3G43610 Spc97 / Spc98 family of spindl... Lus10003353
[exp]
28.4 0.6836
AT1G52500 ATMMH-2, ATMMH-... FORMAMIDOPYRIMIDINE-DNA GLYCOS... Lus10035876
[exp]
29.0 0.6969
AT4G17760 damaged DNA binding;exodeoxyri... Lus10035367
[exp]
55.0 0.6738
Lus10017807
[exp]
60.0 0.6569
AT3G61415 ASK21 SKP1-like 21 (.1.2) Lus10014770
[exp]
64.1 0.6565
Lus10024463
[exp]
67.5 0.6613

Lus10006038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.