Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32860 76 / 8e-17 unknown protein AT1G52140 76 / 2e-16 unknown protein AT3G16330 66 / 6e-13 unknown protein AT4G29110 56 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005478 [exp] 368 / 3e-130 AT1G52140 89 / 2e-21 unknown protein Lus10034944 [exp] 57 / 3e-10 AT1G52140 100 / 3e-27 unknown protein Lus10038274 [exp] 57 / 1e-09 AT3G16330 124 / 2e-35 unknown protein Lus10025828 [exp] 52 / 4e-08 AT1G52140 138 / 8e-41 unknown protein Lus10012967 [exp] 51 / 8e-08 AT1G52140 105 / 5e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046500 [exp] 122 / 4e-34 AT1G52140 94 / 1e-23 unknown protein Potri.006G236700 [exp] 119 / 2e-33 AT4G32860 94 / 4e-24 unknown protein Potri.018G086500 [exp] 97 / 2e-24 AT4G29110 139 / 3e-41 unknown protein Potri.001G188900 [exp] 76 / 1e-16 AT1G52140 127 / 2e-36 unknown protein Potri.014G139900 [exp] 55 / 6e-09 AT1G52140 87 / 3e-21 unknown protein Potri.003G049800 [exp] 49 / 5e-07 AT1G52140 129 / 1e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006040 pacid=23146571 polypeptide=Lus10006040 locus=Lus10006040.g ID=Lus10006040.BGIv1.0 annot-version=v1.0 ATGGAGCGCACCAGTAGTACTTTCAGTTCTCCGCCATTGATGGCGATTAGCAAGAGCAAGCTCCAAAAATTCGTCCGTCTCGCTATAGTAATGATACAGA AGGGCGTCTCCAAGAGCAAGCTGGCGCTGGATCTCCACCTCATCATGAAGCGTGGCAAGGACCTCATGTCTCAACACCAAATCTCCGCCACCTGTCGTCC CGACGACCCCGACACGTCCTTCTTGTCCCCCATCAGCTGCGGCACCGGCCACGTCGACGTCCGCCTCTCCTACGTGTCACCCAGAGACTACCAGTTCAGC TGCACCAACACCCCTTCCTCATCCGCCCTCGGCCGCAACCGCCGCAAACGGAGGAAACCCTACAACCACAACAGCCGCCCGCGTTACAACATGCGCCATT ATGCTTCTCAGCAGTACTCTCAATACCACTACAATTACTACAGACCACAACTACGTTCCCACGTGTCTGCCACATCACATGGTGACGTGGAGGAGGACTG TTATAATTATGCACCGACGACGACGGTGGGAGGGTGCTCCGAGCCAAGGAGCCCATTAGTGAGACAGGTGAGGATAACGGACTCCCCGTTCTCAGCTGCA CAAACTGCTGCCGTGGATTGCCACGTGGACGTGGAGGCTGAAAAGTTTATTCAGAAGTTCTATACGGATCTCAGGTTGCAGAAATGGATGTCGAGCTCTT CCTGCTATCATACCCACAACAATGTTATTTACTGA
AA sequence Show only first row Show all	>Lus10006040 pacid=23146571 polypeptide=Lus10006040 locus=Lus10006040.g ID=Lus10006040.BGIv1.0 annot-version=v1.0 MERTSSTFSSPPLMAISKSKLQKFVRLAIVMIQKGVSKSKLALDLHLIMKRGKDLMSQHQISATCRPDDPDTSFLSPISCGTGHVDVRLSYVSPRDYQFS CTNTPSSSALGRNRRKRRKPYNHNSRPRYNMRHYASQQYSQYHYNYYRPQLRSHVSATSHGDVEEDCYNYAPTTTVGGCSEPRSPLVRQVRITDSPFSAA QTAAVDCHVDVEAEKFIQKFYTDLRLQKWMSSSSCYHTHNNVIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10006040 [exp]	0	1
					Lus10026715 [exp]	1.0	0.9508
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	3.2	0.9445
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	4.2	0.9473
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	4.9	0.9484
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	5.3	0.9406
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	5.7	0.9451
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	6.9	0.9404
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	7.2	0.9343
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	8.1	0.9442
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	8.8	0.9352

Compare expression of checked genes

Lus10006040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.