Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020194 [exp] 61 / 5e-12 ND / Lus10022081 [exp] 55 / 1e-08 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10030094 [exp] 52 / 3e-08 ND / Lus10020402 [exp] 50 / 3e-08 ND / Lus10009393 [exp] 50 / 2e-07 ND / Lus10027046 [exp] 50 / 4e-07 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012364 [exp] 44 / 4e-05 ND / Lus10036264 [exp] 42 / 6e-05 ND 36 / 0.002 Lus10037123 [exp] 42 / 0.0002 AT2G03370 246 / 2e-77 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006041 pacid=23146575 polypeptide=Lus10006041 locus=Lus10006041.g ID=Lus10006041.BGIv1.0 annot-version=v1.0 ATGATTCAACTGGATAAAAGGCAGCCTCCCCGATCTTGGGTTGAGGGGTTGCGGCTACAACTGAAGCAGAAAGATGAATTGCCTGGAGAAGAAGGAGAAA GATGCTTATCCAGGTGTTACAACCACTTGACTATAGGTCATGTCACGAAATCAGTCATGGTCTACAGTTTAGTGAGTAGCGATGCACACATTGCTATTGT GGTAGAACTTGTAATAGTCACGGCGGACCACCTGGACCTGAACGCGAGGGCAAGCCGTCATAAAGGAAAGAATGTCAGCAACCACTGCCCCACCAGCCAC ACATCATGTGCTCCTCTGAGAAACCCGAGAGAGGATGATCTCGGTATCCCCTTCAATGTCAACGTGCCAAACACCATGTCAGAAGCACCACGCACACACG TCACGGACAGCCAGGAGCTCCAGGACATAAGGATCAAGGAGCCATGGATATGTCTACCCAACTCCCTACCTAGGAGGCCAAAACAACAGCCATGGGAGAC GTTGCTACTGGAGCAGCCGGTTGAGGAAGTAAAGAAAGCTCAGCCAACTACCAAAGGAACTGGCAGAGCAGGACCTCGGGTTGGAGCTGTTTCATATCAA AGACCACGAAATTAA
AA sequence Show only first row Show all	>Lus10006041 pacid=23146575 polypeptide=Lus10006041 locus=Lus10006041.g ID=Lus10006041.BGIv1.0 annot-version=v1.0 MIQLDKRQPPRSWVEGLRLQLKQKDELPGEEGERCLSRCYNHLTIGHVTKSVMVYSLVSSDAHIAIVVELVIVTADHLDLNARASRHKGKNVSNHCPTSH TSCAPLRNPREDDLGIPFNVNVPNTMSEAPRTHVTDSQELQDIRIKEPWICLPNSLPRRPKQQPWETLLLEQPVEEVKKAQPTTKGTGRAGPRVGAVSYQ RPRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006041 [exp]	0	1

Compare expression of checked genes

Lus10006041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.