Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G25770 112 / 5e-32 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G70850 41 / 0.0002 MLP34 MLP-like protein 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000573 [exp] 270 / 4e-94 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10005477 [exp] 121 / 1e-35 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10026898 [exp] 76 / 4e-18 AT2G25770 128 / 2e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10028262 [exp] 63 / 9e-13 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040227 [exp] 62 / 2e-12 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236800 [exp] 170 / 4e-54 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237000 [exp] 162 / 7e-52 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 150 / 4e-47 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.018G046100 [exp] 119 / 6e-35 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G063900 [exp] 63 / 5e-13 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G193200 [exp] 50 / 9e-09 AT2G25770 59 / 4e-12 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G237050 [exp] 0 / 1 AT4G32870 0 / 1 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10006042 pacid=23146582 polypeptide=Lus10006042 locus=Lus10006042.g ID=Lus10006042.BGIv1.0 annot-version=v1.0 ATGCAGCAGCCAAAGCGATGGGAAGGCAAGGCGACGGCGGAACTCAAATTACCCGCAGAGCAAGTGTGGCCGGGTTTCGACCGCGACTTCTGCAGTCTCC ACAAGTGGTCCCCCAATCTGGACACGTGTCACCAGCTGGAAGGTGTGGTCGGGCAGCCTGGATTGGTCCGTTACTGCACTTTCAAGTCCAGTTGGTGCAA GGAACGACTGCTCGCCATCGATCCATCCGACCGATGCTTGAGCTACGAGATTCTGGACAACAACATCGGCTTCGGATCCTACGTTGCCACTGTCAGGGTT GTTGATCAGCCGCCCGGAGATTGCTGCAGGATTGAATGGTCGTTCGTTGCTGAGCCAGTCACCGGTTGGACCTTAGAGGGTTTGAATTCGTACCTCAGTT CCAGCTTGGATTACATGGCTTCCAAAATCCAGGCGGAAATTAATAATGGAGAGCTTACTGTGTAA
AA sequence Show only first row Show all	>Lus10006042 pacid=23146582 polypeptide=Lus10006042 locus=Lus10006042.g ID=Lus10006042.BGIv1.0 annot-version=v1.0 MQQPKRWEGKATAELKLPAEQVWPGFDRDFCSLHKWSPNLDTCHQLEGVVGQPGLVRYCTFKSSWCKERLLAIDPSDRCLSYEILDNNIGFGSYVATVRV VDQPPGDCCRIEWSFVAEPVTGWTLEGLNSYLSSSLDYMASKIQAEINNGELTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	1.7	0.9638
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	2.4	0.9542
					Lus10032860 [exp]	4.0	0.9587
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	4.9	0.9509
					Lus10010378 [exp]	6.3	0.9495
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10000506 [exp]	7.5	0.8831
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	7.5	0.9417
					Lus10003556 [exp]	8.0	0.9397
					Lus10038232 [exp]	8.1	0.9488
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	8.4	0.9324

Compare expression of checked genes

Lus10006042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.