Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11650 474 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) AT1G73480 329 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1) AT1G18360 319 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 135 / 2e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G52760 129 / 3e-34 LysoPL2 lysophospholipase 2 (.1) AT1G11090 126 / 6e-33 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 125 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39410 121 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 116 / 4e-29 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 114 / 8e-29 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000572 [exp] 681 / 0 AT5G11650 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009679 [exp] 325 / 8e-109 AT1G73480 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009041 [exp] 307 / 4e-101 AT1G73480 511 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 132 / 1e-34 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10035909 [exp] 128 / 7e-34 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10025754 [exp] 127 / 2e-33 AT1G52760 564 / 0.0 lysophospholipase 2 (.1) Lus10034331 [exp] 127 / 5e-33 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 126 / 5e-33 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 122 / 2e-31 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G045800 [exp] 538 / 0 AT5G11650 540 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G237200 [exp] 527 / 0 AT5G11650 483 / 4e-171 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G041800 [exp] 315 / 2e-104 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G031900 [exp] 313 / 5e-104 AT1G73480 504 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 145 / 4e-40 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 140 / 9e-38 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G175000 [exp] 129 / 6e-34 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.003G059200 [exp] 127 / 1e-33 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.017G114800 [exp] 126 / 1e-32 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G049000 [exp] 124 / 2e-32 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10006043 pacid=23146586 polypeptide=Lus10006043 locus=Lus10006043.g ID=Lus10006043.BGIv1.0 annot-version=v1.0 ATGTCGACTGTGGCGGAGATGGAACCCCTTACGTCCGGTGCGAGCAATCGCATCATTCCCATCCTCAGGGTTTTAAGGAAATCCCTCATTTTCATCCAAT CCATCGTCCTCGCCTTCCTTCTTCTCCTCTTCCCTCGCCGTCGACCTTCTTCTTCTTCTTCTTCCTCCGTGTCGCCTGATTCGTCCTCTGCGCACAATTC CGTCAAGCGCCGATCTATGTGGAGGTTAGAGGAGGAGGATACCGTCAGGAGGAGAGCCCTTGCCGAGGTTATTGATATGACCGTTGACGGTGACACTCGG TCCCGGTTGAACACGTTTTTATTCTTCGGTGTCAAGCGAAATGCTCTCTTTTGCCGCTCCTGGCTCCCTGTTGACGACGATATGAAGGGGATTTTGATCA TCATCCATGGGCTGAACGAGCACGGTGGAAGGTATGCTCCCTTTGCGAAGCAATTAACCGCGGCCAACTTTGGAGTCTATGCAATGGACTGGATAGGTCA TGGTGGAAGCGATGGCTTGCACGGATATGTTCCTTCTCTAGACCACGTTATTGCAGATACCGGGGCTTTTTTGGAGAAGATAAAGTCTGAGCACCCCGGA GTACCATGCTTCCTTTTTGGTCACTCAACTGGTGGAGCTGTTGTTTTGAAGGCGGCCTCATATCCTCGCATTCAAGTGATGGTAGAGGGAATTGTGCTGA CCTCACCTGCTTTGCGTGTTAAGCCTGCACATCCTATTGTTGCGGCGGTGGCACCTATATTTTCTCTAGTGGCGCCAAGGTTCCAATTCAAAGGAGCAAA CAAGAGGGGGATTCCAGTTTCAAGGGATCCTGCAGCATTGCTGGCAAAGTACTCTGATCCCCTGGTATACACAGGTCCCATTAGGGTTCGGACTGGCCAT GAAATATTGCGCATCTCATCCTTCTTGATGCGTAATATCAAGTCTGTGACGGTTCCATTCTTCATCCTCCACGGGACAGCTGACAGAGTGACTGATCCTC TAGCATCACAGGACCTGTACAACGAAGCTGCATCCAAGTACAAAGACATAAGGCTGTACGAGGGGTTTTTGCATGACCTTCTGTTTGAACCTGAGAAGGA GGAAATTGCTGAGGAAATAATCAACTGGATGGAGAAGAAGTTAGCTACTGATGGTGGTGAAAGTGTTTATAGTCCTCGCTGGTAG
AA sequence Show only first row Show all	>Lus10006043 pacid=23146586 polypeptide=Lus10006043 locus=Lus10006043.g ID=Lus10006043.BGIv1.0 annot-version=v1.0 MSTVAEMEPLTSGASNRIIPILRVLRKSLIFIQSIVLAFLLLLFPRRRPSSSSSSSVSPDSSSAHNSVKRRSMWRLEEEDTVRRRALAEVIDMTVDGDTR SRLNTFLFFGVKRNALFCRSWLPVDDDMKGILIIIHGLNEHGGRYAPFAKQLTAANFGVYAMDWIGHGGSDGLHGYVPSLDHVIADTGAFLEKIKSEHPG VPCFLFGHSTGGAVVLKAASYPRIQVMVEGIVLTSPALRVKPAHPIVAAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGH EILRISSFLMRNIKSVTVPFFILHGTADRVTDPLASQDLYNEAASKYKDIRLYEGFLHDLLFEPEKEEIAEEIINWMEKKLATDGGESVYSPRW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10006043 [exp]	0	1
AT5G11650			alpha/beta-Hydrolases superfam...		Lus10000572 [exp]	7.3	0.8627
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	11.3	0.8710
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	16.9	0.8707
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	17.5	0.8551
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	24.2	0.8578
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	33.7	0.8435
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	40.7	0.8493
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	41.4	0.8543
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	50.0	0.8232
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10010352 [exp]	55.0	0.8432

Compare expression of checked genes

Lus10006043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.