Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25790 813 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 453 / 5e-143 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 449 / 2e-141 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G75820 445 / 4e-140 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 442 / 4e-139 HSL1 HAESA-like 1 (.1) AT5G65700 435 / 3e-136 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 432 / 3e-135 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 411 / 4e-127 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 389 / 4e-119 HSL2 HAESA-like 2 (.1) AT5G61480 382 / 4e-116 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011609 [exp] 1753 / 0 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 457 / 2e-144 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 454 / 2e-143 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 445 / 1e-139 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 437 / 6e-137 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027951 [exp] 434 / 1e-135 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 422 / 4e-131 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10025943 [exp] 418 / 6e-130 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013562 [exp] 418 / 6e-130 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237400 [exp] 1066 / 0 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 1046 / 0 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 447 / 2e-141 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 447 / 6e-141 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 446 / 5e-140 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 441 / 2e-138 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 431 / 6e-135 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 428 / 1e-133 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G256500 [exp] 426 / 7e-133 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.007G135400 [exp] 426 / 1e-132 AT1G28440 1109 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006045 pacid=23146572 polypeptide=Lus10006045 locus=Lus10006045.g ID=Lus10006045.BGIv1.0 annot-version=v1.0 ATGGCCAACGAATCCAAAACCTTGCAAACATTCTTCTTCTTATCATTAATATTCCAGCTGAATTTTCTGTCGTTGCTAGCCCAAGAAGACCAAGAAAAAG ATGAGCTTGACATTCTCCTTTCTTTCAAATCCTCTATCCACGACCCTTTCAAACACCTATCCAATTGGAATCATAACATCTCCTCTTCCAAATCCAATTT CTGCAATTGGCAAGGTATCACTTGTGCTAATAACAATTCCTCTCATGTCACTGCCATCAACCTCCCTTGCAAAAACTTATCTGGCCCTATTCCTTCCTCA ATCTTCCGCCTCCCTTATCTCCAATCCATCAATCTCTCCACCAATCAGTTCTCCGGAGAAATCCCACAAAATATATTCTCCACCTCATCTCTCCAACATC TCAACATCAGCAACAACAACCTCACCGGCTCCCTCCCTCAAATGATCTCCCCCATCTTGATGGAGGCACTGGATCTCTCCAGTAATATCCTCACAGGGGG AATCCCAGAAAACATTGGGTCTACTCTTTCCAGATTGAGGTACCTGGATCTTGGAGGGAATCTGTTGGTGGGCAAGATTCCAATCTCCATAACCAACATT TCGGGCTTGGAAAGCTTGACGCTTGCTACCAACAAACTAGTGGGAGAAATTCCGAAGCAATTGGGAACAAGATTGAAGAACCTTAAATGGGTTTACTTGG GTTACAATAACTTCTCCGGCGAAATCCCTCAAGAAATTGGTGGGTTGTCTTTTCTCAACCATCTCGACCTTGTTTACAACAATCTCACCGGAGGAATACC TTCTTCTTTTGGGAATCTCACCAATCTTCAGTACCTTTTCCTCTACCAGAACAAGTTGACCGGTCCGATTCCGCCTTCGATTTTCCGTCTTGAGAGTTTG GTGTCGCTGGATTTGAGCGACAACTCCTTATCGGGTGAAATCCCAAAAGATATGTTTCGGATGCAGAGGTTAGAAATCCTTCACCTCTTCTCCAACAACT TCACCGGCGAAATCCCAGTCGCTCTAAGTTTCCTGACGAGCCTTCAGGTTCTTCAGCTCTGGTCGAATAAGTTCACTGGCGAGATTCCACAAGGACTTGG AAAACAGAGTAATCTCACTGTTTTAGACCTATCAACAAATTTTCTCACTGGGAGGATTCCGGACACTGTTTGCAGCTCCGGGAGTTTATTTAAGCTGATT CTGTTCACCAATTCACTGGAGGGAGAAATTCCAGATAGCTTGAGCTATTGCAGAAGCCTCAGGAGGGTGCGCCTACAGAACAACAAGCTTTCCGGCGGGT TGTCGCCGGAGTTCACGAGGCTGCCACTTGTGTACTTCCTTGACATATCCGGGAACAAGCTTTCCGGGAGGATTGATCGTGGGAGATGGGAGATGCCGTC GCTTCAGATGCTTAATTTAGGCAACAATCGGTTTTCCGGAGGCCTGCCTGACTCATTCGGCAGCGACAAACTGGAGAATTTGGACCTGTCGGAAAATAAC TTTTCCGGTGCTATTCCGGCGACGGCTATTGGGAGCTTAACCGAATTAATGCAGCTGAAACTGAGCAAAAATCAGCTATCGGGTGAAATTCCAGGGAAGC CCTTGTCTTCCTGTAAGAAGCTTGTGAGTCTAGACCTCAGCCACAATCAGCTCACCCGTACGATCCCTACCGACATCGCCGAACTGCCGGTTCTGGGTCA GCTCGACTTGTCGAATAACGAATTATCAGGAGAAATCCCAAAAAGTTTGGGAAGAATGGAGTCGCTAATCCAGATCAATGTCTCACACAATCATTTTCAC GGTGATTTGCCATTGGCTGGAGCCTTTGTAGCCATAAACGCCTCGGCCGTCGCCGGGAACAATCTCTGCACCGGAGTAGAAGAATCCATCTCCAATGGAT TACCTCCCTGCCGGGGAACTAATAGCAAACGCTCCGTAATTTGGCATAATTACTTGGTTGCGTGTATTATCGGCATTGTGGCTTTCCTCGCTCTGGCTTC TTACGCCGTCGTTTTGATTACTCGAAGACGCACCATTATTAAAGTTGAGAATCAAGAAGATGGGAACACATGGGAGCTGAGGCTTTTCAAATCCAACAAG ATTTCGAGATTGATTACGGTGGAAAACATTCTTGGTTCAAGGAAGGACGAGAACGTCATTTCGAGGGGGGACCAGAAAACAGGGAACTCTGTTTTTTCCA TCTCGTACATGGTCGTGAATTCCAGATTTGACAATACATCAGACCTACATGATCATACACGATTCGTGGTGAAGGAAATAGCGAGCGAGTATGTCAGTTC AATTCCTCCGAGTTTCTGGGCCGACATAGAGGAACTTGGCAGGGTTAAGCATCCGAACGTGGTGAAGTTCATTGGAGTGTTGAGATCTAATAAAGATGAT ATGTGTCTAGTGTACAAGTACATCGAAGGGAGGAGTTTGAACGAGGTGGCTCGCGACTTGAGCTGGGAAAAAAGGAAGAGACTCACGATAAGCATCGCCA AAGCTCTCTGGTTCTTGCACAGCCGGGGAAGCATCGTGGGATGCATGTCTCCGGAGAAGATAATTGTCGACGGGAAACATGAGCCTCATATGGAATTAAC ACCACCTGATTTGCTCAACTTTGGGAACAAATGTTTTGCCTCTTCCAAGCATCTTGCTCCAGAAACAAAAGAAAAGAAGGAGTTGACAGAGAAAGGGGAT ATTTACGGGTTCGGGTTGATACTGATCCAGTTGATAACGGGGAAAGGAGCGGCGGACGAAGAGTTAGGAGTGGAAGAGAGCATAGTGGAGTGGGCAAGGT ATTGCTACTCGGACTGCCATATGGAGACATGGGTCGACCCGATGGTGATGATGAAGCATCAAAACGAAGTGGTGGAAGCCATGAACTTGGCTCTCCGTTG CACAGCTACCGACCCGGTGGCCCGGCCGTATGCAAAAGAGGTGGTGAAAACCCTTGAATCCGCTTTTTTACCGGCTTCTTCTTGTGCCGGCTCCGCCATC AAGTTCTAG
AA sequence Show only first row Show all	>Lus10006045 pacid=23146572 polypeptide=Lus10006045 locus=Lus10006045.g ID=Lus10006045.BGIv1.0 annot-version=v1.0 MANESKTLQTFFFLSLIFQLNFLSLLAQEDQEKDELDILLSFKSSIHDPFKHLSNWNHNISSSKSNFCNWQGITCANNNSSHVTAINLPCKNLSGPIPSS IFRLPYLQSINLSTNQFSGEIPQNIFSTSSLQHLNISNNNLTGSLPQMISPILMEALDLSSNILTGGIPENIGSTLSRLRYLDLGGNLLVGKIPISITNI SGLESLTLATNKLVGEIPKQLGTRLKNLKWVYLGYNNFSGEIPQEIGGLSFLNHLDLVYNNLTGGIPSSFGNLTNLQYLFLYQNKLTGPIPPSIFRLESL VSLDLSDNSLSGEIPKDMFRMQRLEILHLFSNNFTGEIPVALSFLTSLQVLQLWSNKFTGEIPQGLGKQSNLTVLDLSTNFLTGRIPDTVCSSGSLFKLI LFTNSLEGEIPDSLSYCRSLRRVRLQNNKLSGGLSPEFTRLPLVYFLDISGNKLSGRIDRGRWEMPSLQMLNLGNNRFSGGLPDSFGSDKLENLDLSENN FSGAIPATAIGSLTELMQLKLSKNQLSGEIPGKPLSSCKKLVSLDLSHNQLTRTIPTDIAELPVLGQLDLSNNELSGEIPKSLGRMESLIQINVSHNHFH GDLPLAGAFVAINASAVAGNNLCTGVEESISNGLPPCRGTNSKRSVIWHNYLVACIIGIVAFLALASYAVVLITRRRTIIKVENQEDGNTWELRLFKSNK ISRLITVENILGSRKDENVISRGDQKTGNSVFSISYMVVNSRFDNTSDLHDHTRFVVKEIASEYVSSIPPSFWADIEELGRVKHPNVVKFIGVLRSNKDD MCLVYKYIEGRSLNEVARDLSWEKRKRLTISIAKALWFLHSRGSIVGCMSPEKIIVDGKHEPHMELTPPDLLNFGNKCFASSKHLAPETKEKKELTEKGD IYGFGLILIQLITGKGAADEELGVEESIVEWARYCYSDCHMETWVDPMVMMKHQNEVVEAMNLALRCTATDPVARPYAKEVVKTLESAFLPASSCAGSAI KF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	0	1
AT2G25790			Leucine-rich receptor-like pro...		Lus10011609 [exp]	4.8	0.7664
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	7.9	0.8004
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	8.4	0.8041
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	8.5	0.7887
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	8.8	0.8132
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	12.5	0.8126
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	14.3	0.8077
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	14.8	0.8043
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	17.4	0.7903
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	17.5	0.7736

Compare expression of checked genes

Lus10006045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.