Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71960 355 / 3e-118 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT1G31770 261 / 4e-82 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT5G06530 234 / 7e-71 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G25620 226 / 1e-68 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G52310 214 / 3e-63 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT4G27420 208 / 4e-62 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G13220 133 / 2e-34 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 82 / 4e-17 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G13610 74 / 2e-14 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G53480 65 / 3e-11 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028704 [exp] 549 / 0 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Lus10035692 [exp] 265 / 2e-83 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 258 / 1e-81 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 258 / 1e-80 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 253 / 1e-78 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 249 / 4e-77 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10015994 [exp] 229 / 5e-70 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10029635 [exp] 216 / 7e-65 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 213 / 7e-64 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111900 [exp] 412 / 3e-140 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 397 / 1e-134 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.004G236500 [exp] 255 / 9e-80 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 249 / 4e-77 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.003G046800 [exp] 234 / 2e-71 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 229 / 3e-70 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 225 / 1e-67 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.011G123200 [exp] 207 / 7e-62 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.006G199500 [exp] 204 / 7e-60 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 156 / 1e-42 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10006046 pacid=23147752 polypeptide=Lus10006046 locus=Lus10006046.g ID=Lus10006046.BGIv1.0 annot-version=v1.0 ATGGCATCCTATAATGCAATTCTGGCTCCAAAGGTGAAATCAGCTTGCTTGGAAGCCACGGCAAAGGAGTTGTCAAGTGTTACCAATGGTGGCATCAACA ACAAAAATTCGTCATCGAAATCGCATCTGAGCTTCCGAGGAGAGCACAGAGTTAGTCTCACGACTTGGTTCCACCAATTCACCATTCTCCTATGCCGTAG CTTGAAGGAGAGAAGGCACGAGTCTTTCAACACACTCCGCGTGTTCCAGGTCCTGGCGGGGGCTCTGTTGGCCGGTTTGATGTGGTGGCACTCGGATTTC CGAGACATCCAGGACCGGCTCGGCTTGTTATTCTTCATATCGATCTTCTGGGGCGTCCTGCCTTCGTTCAACGCGGTCTTCGCCTTCCCTCAGGAGCGTG CCATATTCATGAAGGAAAGGGCGTCCGGAATGTACACGTTGTCATCCTACTTCATGGCTCGAATCGTGGGGGATATGCCGATGGAGCTAGCCCTTCCGGC TATCTTCATCGCCATGGCCTACTGGATGACCGGAATGAAGCCCGATTTGGGTGCGTTTCTCTTGACTCTTCTCATCCTACTAAGCTACGTTCTTGTGTCG CAAGGCCTAGGTCTAGCCCTTGGAGCGGCCATCATGGACGCCAAGCAAGCATCCACGTTGGCCACTGTTACGATGCTCGCATTCGTGCTGACGGGAGGGT TCTACGTGCACAAGGTCCCGACATGTATGGTGTGGATGAAGTACGTCTCCACCACTTTCTACACTTACAGGTTGCTCATCAACGTCCAGTACGGGGACGG GGAGCGGATCGCAAAGGCGTTGGGCTGCTCGGGGCGAAACGGGAGTAGCGGGGGCGATGGAGGACCGAACTGCAAGTTTGTCAGGGAAGATGTGCAAGGA CAAATCAGCCCTTGGTTTAGTGTTGGGGTGATGGTGTTCATGTTTCTGGGGTATAGAGTGCTGGCTTACTTGGCTTTGAGGAGGATCAGAACTTGA
AA sequence Show only first row Show all	>Lus10006046 pacid=23147752 polypeptide=Lus10006046 locus=Lus10006046.g ID=Lus10006046.BGIv1.0 annot-version=v1.0 MASYNAILAPKVKSACLEATAKELSSVTNGGINNKNSSSKSHLSFRGEHRVSLTTWFHQFTILLCRSLKERRHESFNTLRVFQVLAGALLAGLMWWHSDF RDIQDRLGLLFFISIFWGVLPSFNAVFAFPQERAIFMKERASGMYTLSSYFMARIVGDMPMELALPAIFIAMAYWMTGMKPDLGAFLLTLLILLSYVLVS QGLGLALGAAIMDAKQASTLATVTMLAFVLTGGFYVHKVPTCMVWMKYVSTTFYTYRLLINVQYGDGERIAKALGCSGRNGSSGGDGGPNCKFVREDVQG QISPWFSVGVMVFMFLGYRVLAYLALRRIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	0	1
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10028704 [exp]	7.3	0.7353
AT5G06980			unknown protein		Lus10026150 [exp]	8.2	0.6726
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	9.8	0.6256
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	18.6	0.6397
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	32.4	0.5954
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10023499 [exp]	34.9	0.5974
AT5G55380			MBOAT (membrane bound O-acyl t...		Lus10003655 [exp]	38.2	0.5026
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	42.0	0.5810
					Lus10042115 [exp]	42.2	0.5417
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	44.5	0.5264

Compare expression of checked genes

Lus10006046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.