Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35660 1353 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028705 [exp] 2116 / 0 AT1G35660 1215 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083100 [exp] 1683 / 0 AT1G35660 1402 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006047 pacid=23147736 polypeptide=Lus10006047 locus=Lus10006047.g ID=Lus10006047.BGIv1.0 annot-version=v1.0 ATGGAGAAACCGTCGCCACCTTCGTCTCCGTCGTCGAGCTCATTGGACGGTTCCAAGGAGCTGCAGTGCGTCGGTAGGTTGGAGATCGTGAGGCCGAAGC CAGTGGGTTTCCTATGTGGCTCCATTCCTGTGCCGACTGATAAGTCGTTTCATGCCATCGATTCGGCTCTTGTTCCTTCGAGCCAGAAGGTGAGTGCGCC GAGGTATAGAATGCTTCCGACGGAGACTGATCTCAACACTCTTCCAGTTGTTTCTAACTTGCCTGAGAAGGTTCTTCCGATCGGTGCTGTACAGTCTAAA ACCACCGGCGAACTGCTATGGGAAGGAGATGCTGTCTCATCGAACATTAGAAGGAAATGTGAAGCCCTTGCTGTAACTGGTCTAGTTGAATATGGAGATG AGATAGATGTGATAGCTCCAGCTGATATCCTGAAGCAAATCTTTAAGATGCCCTATTCCAAAGCTCGGTTGTCCATTGCAGTGCGTCGTATTGGAAAAAC GCTTGTTTTGAATTCAGGGCCTGATGTTGAGGAGGGAGAGAAGCTAGTCAGAAAACATGGAACTCAATCAAAATGTGCTGATCAATCTCTATTTCTGAAC TTTGCTATGCATTCAGTGAGAATGGAGGCCTGTGATTGTCCGCCATCCCATCATATGCAGGAAGGCCAATCAAAGTCCTCTGCTTTGCCCGAGGGAAGAA CTTCACAGTCTGGTAGGAACAGTGATGATGCTTTACCGAATAAAGAAGTGAAACAAGGGGGTTTCTTATTAGAAAGTAAGAAGAACAAGAGAAACAAAGC TCACCATCCTATTAAGAAAACATCACATGTCAGTGAGAAGTCTAAGAGCACGGTACAAGAATCTGAGAAACATAAAAGAGTGAGAGATGATGGGTTTTTA AGGGCATTGTTCTGGCAGTTCCATAACTTCCGCATGCTTCTGGGCAGTGACTTGCTTCTGTTCAGTAATGACAAGTACCTTGCCGTGAGCTTGCATTTAT GGGATGTGACACGACAGGTCACTCCCTTAACTTGGCTTGAAGCCTGGCTTGACAATGTGATGGCAAGTGTACCCGAGTTAGCCATTTGTTATCATGAAAA TGGTGTTGTCCAGGGCTATGAACTTCTGAAAACGGATGAGATATTTTTACTTAAAGGAATCTCCGAAGATGGTACACCAGCTTTTCATCCTCATGTTGTT CAGCAGAATGGTCTTTCTGTGCTGAGATTCCTTCAAAAAAATTGCAAGCAAGATCCTGGTGCTTATTGGCTTTACAAAAGCGCTGGTGAAGACATGATTC AACTTTTTGATCTTTCTATAATTCCTGACAATCATTCTTCCAGTGACTATAATGATGATTCAAGCTCCTTGCCACCACTGCATAGAGGATGTGATTCCTC GTTCTCATTGGGAACTCTCCTTTATCGCGTTGCACACAGGCTCTCCCTTTCAATGGCTCCTAACAGAAGAGCAAAGTGTGCTAGGTTCTTCAGAAAGTGC TTGGAATTCCTCGAAGAGCCAGATCATCTGGTTGTTCGTGCATCAGCTCATGAAGAATTTGCACGGCTTCTTTTGACTAATGTTGAAGAGTTGGAATTAA GCTCAGAATCACTTACTATAGACTATGAAGCTACAGTCCCAGTGCTGTCTCAGGATCCATTTGATTCTTCCCCCGAGTATGTTGTGGAGGAGGGCGACAC TGAAACAGTTTTAAAAAGTATGGGGACTCTAGAAAAAACTGAATTATTAGAAGCTACAGAGAGGACATTGGAGGTGGATGAACCAGTTCCCCGTAGTTTG ATGCCCTTGGGTTACACCGAACCGAGAGACCCAGTAGAAGACCTACCAATTATCGATTCTGATGAAAGCCTTGTAGTTTGTGAGATACCCGAGCCATCCA CACAGGTGGTTCAAACAGTCGGTGATCCCATATCCACTAAGCTTGCTGCTGTACATCATGTTTCACAAGCCATTAAGTCGCTCAGATGGATGCGCCAGTT ACAACCTTCTGATGCAGAGTTAATTAATGAAGACAGCATTGCTTATAATCAGCCTCCTGCAGAATTCTCCGTCTGCGCTTGTGGTGATCCTGACTGCATT GAAGTTTGTGACATCCGTGAATGGCTTCCAACGTCAAAAATAGATCATAAACTGTGGAAACTCGTTCTTCTACTTGGAGAATCTTATCTGGCCCTTGGGC AAGCTTATAAAGAAGATAAACAGTTGCATCAGGCTCTCAAGATCGTAGAGTTAGCATCTTCTGTTTATGGATCAATGCCACAGCATCTGGACGATGCTCG GTTTCTGTCCTCAATGGTTAAGTATTCGCCCTCAAGGCAGTCTACCGATGAAGATGGCAAGCTAATATCTTATATTGGTAATGTAAAGGGAGTGGAATCT GGTACTAATGATGACAAGCTTGCCTTTGAGCATATGTCTTTGACATATCTATTCTGGGCAAAGGCATGGACATTGGTTGGAGATGTCTATGTCGATTTTC ATTTCATGAAAGGTTCAGAACTCTTGTTGCAAACGGAGAAGAAAAAATCTCTTGCAGAATTGCGAATGCCAGGTGAGGTAGTGAAGGAGGTCCAAAGGCT GAAGAAAAGGCTGGGTCAGTCTGTTCAGAATTGCAGTTCTTGTTCTTTGGTGAATTGTAGTTGCCGGAGCGATAGGGCCAGTAGTGGTAACAGTGCAAGT AGCAGCAGTGGAATTTCTAAGCCTTCTGTATCTTATGGCAGAAAGCACGGGAAAAGATCCGGTTCTAAGAAAGTTAAATCGCCAATACTACTAGACAGCA AGGATGATCCTGTTAATGGAGATATGGTAACTAAGAATAAGCCAGAGGGAAGGCTTTCTCAACCCGGCCAAGATGGTGAAATCCCGGCAGCATATTCGGG TATTTCCATGGAACAGTTTGGGGAGAATCCTGATATAGTTGGCTTGGAGCGCCATAAATCTGCTACAGATTCAAAAGACAACCCTAGAAGCCAGGATGGT GGGATATTTAAGTACCTTAGGGGAACCATTGTTGGAGGCACGGAGGATAACCTTTCTACTGCCCGAACTTGCTATGAAGAAGCTAGAAAAGCACTAACTG GTCTTTCATCCGCTTCGCTGGAACTGCAGTCTTTATTAAAGAAGATAGGGTGGGTCTGCAACGAAATCGGCAGAAAGAGTCTGGAAAGGAATCAATTGAC AGAGGCGGAATGTGCTTTTGCCGATGCCATCAGTGCATTCAAGGAAGTCTCTGACCACACAAACATCATATTGATTAATTGTAACCTCGGCCATGGCAGA CGAGCATTGGCCGAGGAAATGGTGACAAAAGCAGAAAGTCTCAGACTTCATGCAATCTTCCAGAAAGTACACAAGCAAGCTCTAGAAACTGCAAAGCTCG AATACCGTGAATCACTTGGGTACTATGGGGCAGCAAAGGCCGAACTGAATGCGATATCAGATGATGCAAACTCTGTGTCGGTTGGTCTTAGAAATGAAGT GTGCACTCAGCTGGCTCATACATATCTGAGGCTTGGCATGCTTTTGGCAAGAGAAGACATAACCGCTGAAGTATACGAAAATGAGTCGTCCTGTGCCAGT AGAACTCGAAAAGGTGGGAGGATGCACGAGATTTCTGCCAATGATGCTATCAGGGAGGCATTGTCTCTGTACGAGTCCCTAGGTGAAATTCGCAAACAAG AAGCTGCATATGCCTACTTTCAGCTTGCTTGCCATCAAAGGGATTGCTGCTTGAAGTTTCTGGAGACAGACCGGAATACCAAAGGTGAAAATAGCAGTCT ACAGCGGGTGAAGCAATATGCTTCTCTGGCCGAGAGGAACTGGCAAAAATCGGTCGATTTTTACGCTCCAGAGACACACCCTACCATGTATCTCACCATC GTCATAGAGAGATCTGCTCTATCAGTAACTCTCTCGTCCTATTTACACCCGCAATCTATGCTTGAATCCGCTCTCTGTCGTCTACTCGAAGGGCGCCACA TATCCAATGCAGTTTTGGATACGTTCCAATCCAATTCCCCCTTACTCCACGCCAAGTTCTGGGACCAGCTACAAACCGTCTTAAAGAAACTGCTGGCGAC AACACTGTCCGAGAGCACGAAAAAACATCGCCCCGCCAACAACACACAAAATCAGCATCACCATCCTATTACACCAGGATCGAACCGGCATTGCGATACA GGAAAGCTAAGAGAACTCTACAAGATGTCACTCAAGTCTACCGACTTCGGCCAGTTACATTCCATGCACGCCCTGTGGACATCATAA
AA sequence Show only first row Show all	>Lus10006047 pacid=23147736 polypeptide=Lus10006047 locus=Lus10006047.g ID=Lus10006047.BGIv1.0 annot-version=v1.0 MEKPSPPSSPSSSSLDGSKELQCVGRLEIVRPKPVGFLCGSIPVPTDKSFHAIDSALVPSSQKVSAPRYRMLPTETDLNTLPVVSNLPEKVLPIGAVQSK TTGELLWEGDAVSSNIRRKCEALAVTGLVEYGDEIDVIAPADILKQIFKMPYSKARLSIAVRRIGKTLVLNSGPDVEEGEKLVRKHGTQSKCADQSLFLN FAMHSVRMEACDCPPSHHMQEGQSKSSALPEGRTSQSGRNSDDALPNKEVKQGGFLLESKKNKRNKAHHPIKKTSHVSEKSKSTVQESEKHKRVRDDGFL RALFWQFHNFRMLLGSDLLLFSNDKYLAVSLHLWDVTRQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDEIFLLKGISEDGTPAFHPHVV QQNGLSVLRFLQKNCKQDPGAYWLYKSAGEDMIQLFDLSIIPDNHSSSDYNDDSSSLPPLHRGCDSSFSLGTLLYRVAHRLSLSMAPNRRAKCARFFRKC LEFLEEPDHLVVRASAHEEFARLLLTNVEELELSSESLTIDYEATVPVLSQDPFDSSPEYVVEEGDTETVLKSMGTLEKTELLEATERTLEVDEPVPRSL MPLGYTEPRDPVEDLPIIDSDESLVVCEIPEPSTQVVQTVGDPISTKLAAVHHVSQAIKSLRWMRQLQPSDAELINEDSIAYNQPPAEFSVCACGDPDCI EVCDIREWLPTSKIDHKLWKLVLLLGESYLALGQAYKEDKQLHQALKIVELASSVYGSMPQHLDDARFLSSMVKYSPSRQSTDEDGKLISYIGNVKGVES GTNDDKLAFEHMSLTYLFWAKAWTLVGDVYVDFHFMKGSELLLQTEKKKSLAELRMPGEVVKEVQRLKKRLGQSVQNCSSCSLVNCSCRSDRASSGNSAS SSSGISKPSVSYGRKHGKRSGSKKVKSPILLDSKDDPVNGDMVTKNKPEGRLSQPGQDGEIPAAYSGISMEQFGENPDIVGLERHKSATDSKDNPRSQDG GIFKYLRGTIVGGTEDNLSTARTCYEEARKALTGLSSASLELQSLLKKIGWVCNEIGRKSLERNQLTEAECAFADAISAFKEVSDHTNIILINCNLGHGR RALAEEMVTKAESLRLHAIFQKVHKQALETAKLEYRESLGYYGAAKAELNAISDDANSVSVGLRNEVCTQLAHTYLRLGMLLAREDITAEVYENESSCAS RTRKGGRMHEISANDAIREALSLYESLGEIRKQEAAYAYFQLACHQRDCCLKFLETDRNTKGENSSLQRVKQYASLAERNWQKSVDFYAPETHPTMYLTI VIERSALSVTLSSYLHPQSMLESALCRLLEGRHISNAVLDTFQSNSPLLHAKFWDQLQTVLKKLLATTLSESTKKHRPANNTQNQHHHPITPGSNRHCDT GKLRELYKMSLKSTDFGQLHSMHALWTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35660			unknown protein		Lus10006047 [exp]	0	1
AT1G35660			unknown protein		Lus10028705 [exp]	1.0	0.8860
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	2.8	0.8819
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	6.0	0.8686
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	7.7	0.8443
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	11.7	0.8534
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	14.1	0.8176
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	15.0	0.8296
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	15.5	0.8520
AT5G57460			unknown protein		Lus10004736 [exp]	18.1	0.8429
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	18.7	0.8363

Compare expression of checked genes

Lus10006047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.