Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 1036 / 0 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT2G16640 624 / 0 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 621 / 0 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT5G20300 435 / 5e-136 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 120 / 2e-29 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT4G02482 106 / 1e-26 chloroplast outer envelope GTP-binding protein, putative (.1) AT1G02280 104 / 5e-24 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 97 / 7e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028706 [exp] 1242 / 0 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 628 / 0 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028707 [exp] 601 / 0 AT4G02510 498 / 2e-165 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 415 / 6e-129 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 412 / 2e-127 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10043414 [exp] 346 / 1e-104 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 323 / 3e-94 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10027835 [exp] 313 / 2e-88 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10004619 [exp] 144 / 6e-38 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G224900 [exp] 845 / 0 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014300 [exp] 827 / 0 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 794 / 0 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131200 [exp] 620 / 0 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 617 / 0 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 613 / 0 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 453 / 2e-142 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 423 / 3e-131 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.002G183400 [exp] 115 / 9e-28 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.014G109400 [exp] 113 / 3e-27 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10006048 pacid=23147746 polypeptide=Lus10006048 locus=Lus10006048.g ID=Lus10006048.BGIv1.0 annot-version=v1.0 ATGGCGTCCAACGCAGCTCCGGATTCTCCGTCTCCCAGCAACTTCTCAGCTGCCGATGATGTAACTGTGGAGAAATCTGGAATTGAGCTGGATAAGCCTG CTCACGATGACGATGATAACGACGAGAAAGCTAGAGAAGGTTTGGTGAAAGTAGCTGAAACGATGAAGGAACCGGACTCCGTCGTGGAGGCTGTTCGTGT TGAATTGGCCGGACCGGGAGTGGCCGTGGTTGGAGAAGCGGAGGAAAGTAAGGCGGAGAAGGAGGAGGTGGTGGTTGATGAGAGTCTGCCGCTGGATAAT GAGTTCGATAAGATTGGTGGCGAGGCGGAAGAATCGATTCAATCGGATAAGAAGGATAAGGCTATCGGTGGTGATGATAAGGTAAGTGTAGAATTGGACA CGGTTGTTGATGGTGTTCATTTGAATTTGTTAGAACCAGGAGTAGTGGCAGTTGTTGAAGAAGTAGAAGGGAGTAAGGAGGAGGCTGAATTTGTGGCAAT GTTGGAGGAGAAAGTGGAGAGTTTTCCTGTGGATGATAATAAGTTTGATAACATTGCTAGTGGTAGTGAGGATTTGGTCAAATTGGATAAGGTTTCATTG CCTGAGAAGGGAGATGCAGAAGAATTGGACTCGGTTGTTGATGCTGTTCATGTCGAATTGGCGGAACCGGGATTGGCTGTTGTTGGAGAAATGGAAGGGA GTAGTAAGGAGGAAGCTGAATTTCTGGCGATGTTGGAGGAGAAAGTGGTTGATAGTTTTCCTGTGGAAGATAATAAGTTTGAAACCATTGCTGGTGATAG TGAAGACTTGGTCAAGTTGGATGTGAATCATACTGACGCTCGAACTGGTAGTGATGATGCTGCAGATATCAAAATTTCGGGTCTTGGAAATGAGGGAAGT GAGGTCAATGGAAATGTGGCTGAGGGTGATGCTGTGCCAAAAGGTGAACTGGAGGTTACTGCACGAGAAGTTAGTCTGGAAGAGCTTAGTGGCGATACCA AATCAAGTGATGAAAGAAAGGAAGCAAATTTGCTTGTTGATGGAGGCGCAGCTGATCAGACTGTCGTCGCAGTTGCTTCGAGCAATCGGTCTGTTCCGGT TGTCGATGATTTGGAACAAGATGACCAAGCCGCTGAAAGTAAGGAGAGTGACAAAACTATGGAGGCCTTGACTGAATCTGATGTTGGTCAAATTGCTGAA TTTGATAATGTGACTAAAGAAGCTGAAGATGAAGAATCGGAGGATGAAGGTGAAGAGAAGACTCGGTCTTATGAAGAATCGGAGTCGGATGAAGAAACAG AAGATAAGGTGTTTGGAAGCTCAGAAGCTGCCAAGCAATTCCTGAATGAGTTGAAGCAAGATGGTCAAATTGTAACCGATTCCGAAGAAGAGGAAGAGGA AGAAGAAGAAGGAGATACCGATGAAGAAGAAGACGGTGAAGGGAAAGAGCTCTTCGATTCGGCAGCATTGGCAGCTTTGCTGAAAGCAGCCAGCGCAGGA GGAGGAACAAGTTCCGAAGGTGGCGGTGGTGATCATACCGTCACAATAACATCTCAAGACGGTTCACAGCGTCTCTTCTCTCTCGAGCGGCCTGCGGGGT TAGGATCGTCATTGGGAGCAATGAGACCACGAACGATGATTCCGAATCGTTCAAATCTTTTTGGCCCTCCAAGGGAAGAACCGAGTGATGAGAGCTTGAG CGATGAACAGAAGAAGAAGCTGGAAGATATGCAGCAGATGATGATCAAGTACTTGAGGCTTGTTTTCAGGTTAGGGTATTCACCAGACGAGTCGATCGTT TCTCAGGTTCTGTATCGAATGGCGATGATTGCTGGGAAGAAAAGCGGCCAGATTTTCAATGTCGATTCTGCAAAGAGGATCGCTCTTCAGCTCGAAACGG AGAGGAAGGATGATGACGACGTCAGCTTCTCTCTGAACATACTTGTTCTTGGAAAGTCAGGAGTGGGGAAGAGCTCTACGGTGAATGCGATTTTCGGGGA AGAGAAGTCGGTAATCGACGCTTTCGAACCTGCCACTGGTTCTGTAAAAGAAATCAATGGCGTGGCGGATGGGATCAAGATCAGGATCATCGATTCCCCG GGGCTGAAATCGTCAGGTTCCGAGCAAGGCACGAATCGGAGGATACTGAATTCTATAAAGAGGTACATGAAGAGATGCCCTCCAGACATTGTACTGTACG TGGACCGGCTCGATACCCAGACGAGGGATCTAAACGACCTCCCGTTGCTGAAGTCGATCACTAGCCATCTCGGCTCTTCGATCTGGCGGAACGCGATCGT CACTCTCACTCACGCAGCTTCAGCGCCATCTGATGGACCGTCAGGTGCACCTCTGAGTTACGATGTGTTTGTTGCTCAGCGGTCGCACGTTCTCCAGCAG TCGATCGGTCAGGCTGTCGGCGATCTCCGTCTGATGAATCCAAGCCTGATGAATCCGGTATCGCTCGTCGAGAATCACTCTTCCTGTCGCAGGAATCGAG ACGGTGAAAAAGTGCTTCCGAATGGTCAGAGCTGGAGGCTTCAGCTTCTGCTGTTATGTTCCTCGATGAAGATACTCTCCGAATCGACCGCTCTCTCAAA ACCGGCTTCTTCTCAGGATGCTGCTTTCGATCCTCGAAAGCTATTCGGAGGAGGCCGAGCTCGTTCGCCACCGCTTCCTTACATGCTGTCATGGCTGCTG CAGTCTCGTCCGCACCCAAAGTTGCCGGCTGATGAGAGCAGCATCGACGAAGATATTGAACTGGCCGATTATTCCGATTCTGATCAGGAAGATGAGTCGG ACGAGTACGATCAGCTCCCGCCGTTCAAGCCGTTGAGGAAATCTCTGCTTGCCAAGCTAAGCAAAGAGCAGAAGAAAGCATACCTCGAGGAATACGATTA CAGGGTGAAGCTACTGCAGAAGAAACAGTTAAAAGAAGAGCTCAGAAGAATGAAGGAAATGAAGAAGAAGGGTAAAAACGCTGCCGTTTTAGAAGATGAT TATGCTGCTGATCCTGAAAATGGCGAGCCGGCAGCTGTGCAAGTTCCCTTACCGGACATGGTCCTGCCGCCTTCGTTTGACAGCGATAATCCGGTTTACA GGTATCGGTTCCTGGAACCAAATTCTCAGCTTTTGGTTCGACCGGTGCTCGACACTCACGGCTGGGACCACGATCCTGGTTACGATGGAGTCAACGTCGA GAACAGTTTAGCCATTGCTGGTAAATATCCTGCAGCGTTGACCGTCCAGGTGACTAAAGACAAGAAGGATTTCAACCTGCATTTGGATTCGTCGGTGGCC ACGAAGCACGGTGGGGAGGACAACAGTGGCTCGAGCATGGCCGGGTTCGACATCCAGAACGTCGGGAAACAAATGGCATACATCGTCCGGGGCGAGACCA AGTTCAAGAACTTCAAGAAGAACAGGACTGCGGTGGGTGTCTCGGTCACCTTTCTGGGGCCGAATGTGGCTACCGGGTTCAAGCTCGAGGACCAGATCTC GCTCGGAAAGCGCATGGTTTTGGTTGGGAGCACTGGGACGGTCAGGTCTCAGGGAGATTCAGCGTACGGGGCGAATTTGGAAGTGAGGCTCAGGGAAGCG GATTTCCCGATCGGGCAGGATCAGTCTTCGCTCGGGCTGTCGTTGGTGAAATGGAGAGGAGATTTGGCTCTGGCGGCAAATCTTCAGTCGCAGTTCTCAG TCGGACGGAGTTCGAAGATTGCGGTTCGTGCTGGGCTGAACAACAAGCTTAGCGGACAGATCAGTGTGAGGACGAGCAGCTCGGATCAGCTTCAGATCGC GTTGGTTGGGCTTCTCCCGATATTGGCGTCGATATACAAGAGCATTCGTCCTCCCGCATCTGAAGAAAGCTATTCCTTGTATTAG
AA sequence Show only first row Show all	>Lus10006048 pacid=23147746 polypeptide=Lus10006048 locus=Lus10006048.g ID=Lus10006048.BGIv1.0 annot-version=v1.0 MASNAAPDSPSPSNFSAADDVTVEKSGIELDKPAHDDDDNDEKAREGLVKVAETMKEPDSVVEAVRVELAGPGVAVVGEAEESKAEKEEVVVDESLPLDN EFDKIGGEAEESIQSDKKDKAIGGDDKVSVELDTVVDGVHLNLLEPGVVAVVEEVEGSKEEAEFVAMLEEKVESFPVDDNKFDNIASGSEDLVKLDKVSL PEKGDAEELDSVVDAVHVELAEPGLAVVGEMEGSSKEEAEFLAMLEEKVVDSFPVEDNKFETIAGDSEDLVKLDVNHTDARTGSDDAADIKISGLGNEGS EVNGNVAEGDAVPKGELEVTAREVSLEELSGDTKSSDERKEANLLVDGGAADQTVVAVASSNRSVPVVDDLEQDDQAAESKESDKTMEALTESDVGQIAE FDNVTKEAEDEESEDEGEEKTRSYEESESDEETEDKVFGSSEAAKQFLNELKQDGQIVTDSEEEEEEEEEGDTDEEEDGEGKELFDSAALAALLKAASAG GGTSSEGGGGDHTVTITSQDGSQRLFSLERPAGLGSSLGAMRPRTMIPNRSNLFGPPREEPSDESLSDEQKKKLEDMQQMMIKYLRLVFRLGYSPDESIV SQVLYRMAMIAGKKSGQIFNVDSAKRIALQLETERKDDDDVSFSLNILVLGKSGVGKSSTVNAIFGEEKSVIDAFEPATGSVKEINGVADGIKIRIIDSP GLKSSGSEQGTNRRILNSIKRYMKRCPPDIVLYVDRLDTQTRDLNDLPLLKSITSHLGSSIWRNAIVTLTHAASAPSDGPSGAPLSYDVFVAQRSHVLQQ SIGQAVGDLRLMNPSLMNPVSLVENHSSCRRNRDGEKVLPNGQSWRLQLLLLCSSMKILSESTALSKPASSQDAAFDPRKLFGGGRARSPPLPYMLSWLL QSRPHPKLPADESSIDEDIELADYSDSDQEDESDEYDQLPPFKPLRKSLLAKLSKEQKKAYLEEYDYRVKLLQKKQLKEELRRMKEMKKKGKNAAVLEDD YAADPENGEPAAVQVPLPDMVLPPSFDSDNPVYRYRFLEPNSQLLVRPVLDTHGWDHDPGYDGVNVENSLAIAGKYPAALTVQVTKDKKDFNLHLDSSVA TKHGGEDNSGSSMAGFDIQNVGKQMAYIVRGETKFKNFKKNRTAVGVSVTFLGPNVATGFKLEDQISLGKRMVLVGSTGTVRSQGDSAYGANLEVRLREA DFPIGQDQSSLGLSLVKWRGDLALAANLQSQFSVGRSSKIAVRAGLNNKLSGQISVRTSSSDQLQIALVGLLPILASIYKSIRPPASEESYSLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	1.0	0.9576
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	2.8	0.8725
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	6.2	0.8612
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	7.5	0.8415
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10027077 [exp]	15.2	0.7084
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	17.0	0.8179
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	17.2	0.7905
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	17.3	0.7833
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	17.9	0.7650
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	19.9	0.7742

Compare expression of checked genes

Lus10006048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.