Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 841 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 591 / 0 Protein of unknown function (DUF668) (.1) AT1G30755 418 / 2e-138 Protein of unknown function (DUF668) (.1) AT3G23160 76 / 3e-14 Protein of unknown function (DUF668) (.1) AT5G51670 75 / 5e-14 Protein of unknown function (DUF668) (.1) AT5G04550 61 / 1e-09 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028708 [exp] 1098 / 0 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 495 / 3e-168 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 490 / 2e-166 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 483 / 3e-163 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 411 / 4e-137 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 368 / 6e-121 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 82 / 5e-16 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 81 / 2e-15 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 75 / 2e-15 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085900 [exp] 915 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 906 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 581 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 557 / 0 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 509 / 6e-174 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 503 / 7e-172 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 82 / 6e-16 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 78 / 9e-15 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 72 / 6e-13 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 71 / 7e-13 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10006049 pacid=23147738 polypeptide=Lus10006049 locus=Lus10006049.g ID=Lus10006049.BGIv1.0 annot-version=v1.0 ATGGGGGGACTTTGTTCAAGGAGTTCCACTGTAGATAATGCTTTAGGAGGTGGTGGTGGAAGCCTCTCCCATTCGAATGGTCACCTGAACGAGCAGGGCG GTTCGATTTACGATCAGTCTTGTGATGTCAAAGCAAGTAGTACCACGACGATGAAGCCTCCAGCTATAGAGAGTGTTGATAATCAGCGGGAAGAGCTGGG ATCGTCTATGGAGTTGAATGTGGCTCCTCATGGTATGAGTCCTGATGAGCTTTACGATGGCATCCCTCGTTTGCCGAGGGTGCTTTCGAACAAGTCTCGA TCGACCAAGTCCAAGCAGGCCGCCGTTTCAAAGGTTTCAGAAGTTATAGGCAGAGCCGGTACTGCTGGCCTCGGCAAGGCAGTAGAGGTATTGGACACGC TCGGTAGCAGCATGACAAATCTAAATCCCAGCAGCGGATTTACGTCAGGAGTGACGACAAAGGGGAACAAGATTGCGATTTTGTCGTTCGAAGTTGCTAA CACGATCGTTAAGGGTGCCAATCTAATGCAATCCCTTTCAAAGGAGAGCATCATACATCTCAAAGAAGTAGTGCTTCCTTCTGAAGGGGTCCAAAATTTG ATATCCAGAGATATGGACGAGCTGTTGAGGATCGCGGCATATGATAAAAGAGAAGAATTGAAAGTGTTTTCTGGAGAAGTGGTACGTTTCGGAAATCGTT GCAAAGATCCTCAATGGCACAACTTGGACCGTTATTTTGACAAGTTAGGCTCGGAGCTTACGCCTGAGAGGCAACTTAGGGAAGAGGCTGAGGCAATGAT GCAAAACTTGATGACAATGGTTCAGTACACAGCTGAATTATATCACGAAATGCATGCTTTGGACAGATTCGAGCAAGATTACCAACGTAAGCTTCACGAA GACGAGAACTCGAGTACTGCACAAAGAGGAGATAGCCTCACGCTTTTGAGGGCGGAATTGAAGAGTCAAAGGAAGAACGTGAAAAGTTTGAAGAAGAAAT CCCTTTGGTCCAAGATTTTGGAAGGGGTAATGGAGAAACTTGTAGACATTGTCCATTTCTTGCATCTGGAGATTCATGAAGCCTTTGGAAATGCAGATAG CGATAGACCGGTGAAAAGTTCGGCGAACAATCACAAGAAGCTCGGTTCGGCTGGCCTTGCTTTGCATTATGCGAATATCATCACACAAATCGATACACTT GTGTCTCGATCTAGTTCTGTGCCTCCAAGTACGAGGGACGCATTGTACCAAGGTCTGCCACCTAGCATCAAGTCCGCCCTCCGCTCCAAACTGGTTTTCT TGCAGGTCGACGAAGAGCTTACTGTCCCTCAGATCAAAGACGAAATGGAGAAAACCTTGCGATGGCTTGTACCGATCGCTGCCAACACAACCAAAGCGCA CCACGGGTTCGGTTGGGTTGGAGAATGGGCAAACACAGGGTCCGAAATGAACCGAAAACCGGCCGGGCAGAACGACTTGCTCAGAATCGAGACGCTGCAC CACGCCGATCAAGACAAGACTGAGATGCACATCCTTCAACTCGTGGTGTGGCTCCACCATCTCGTCAACCAAGTACGAGCTGCCAACGGTGGTGGGCTCC GGTCTCCTGTAAAATCGCCCATTCGATCCCCGAAGACGATCCAGCTGGCGTCCGCGGCTCCTCAGTCTCCGATGTTGACGGTCGAAGATCACGAGATGCT TAGGGACGTTATCAAGAGGAAGAAACCACCCGGAATAAGCAAGAGCCAGGAATTCGACACGGACCGAATCAACCGGCTGAGCAAGCACCATAGGCTTACC AAGAGCAGCAGTCACTCGCCGATCCGTGAAACGAAAAGAGACCCTTTCCCCATTAGAAGACCCTCGTCGATCCCTCTGGTCATCGACTTCGACATTGACC GGATCAAAGCGCTGGATGTTATGGATCGCGTCGACACAATTCGTAGCCTGTAG
AA sequence Show only first row Show all	>Lus10006049 pacid=23147738 polypeptide=Lus10006049 locus=Lus10006049.g ID=Lus10006049.BGIv1.0 annot-version=v1.0 MGGLCSRSSTVDNALGGGGGSLSHSNGHLNEQGGSIYDQSCDVKASSTTTMKPPAIESVDNQREELGSSMELNVAPHGMSPDELYDGIPRLPRVLSNKSR STKSKQAAVSKVSEVIGRAGTAGLGKAVEVLDTLGSSMTNLNPSSGFTSGVTTKGNKIAILSFEVANTIVKGANLMQSLSKESIIHLKEVVLPSEGVQNL ISRDMDELLRIAAYDKREELKVFSGEVVRFGNRCKDPQWHNLDRYFDKLGSELTPERQLREEAEAMMQNLMTMVQYTAELYHEMHALDRFEQDYQRKLHE DENSSTAQRGDSLTLLRAELKSQRKNVKSLKKKSLWSKILEGVMEKLVDIVHFLHLEIHEAFGNADSDRPVKSSANNHKKLGSAGLALHYANIITQIDTL VSRSSSVPPSTRDALYQGLPPSIKSALRSKLVFLQVDEELTVPQIKDEMEKTLRWLVPIAANTTKAHHGFGWVGEWANTGSEMNRKPAGQNDLLRIETLH HADQDKTEMHILQLVVWLHHLVNQVRAANGGGLRSPVKSPIRSPKTIQLASAAPQSPMLTVEDHEMLRDVIKRKKPPGISKSQEFDTDRINRLSKHHRLT KSSSHSPIRETKRDPFPIRRPSSIPLVIDFDIDRIKALDVMDRVDTIRSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34320			Protein of unknown function (D...		Lus10006049 [exp]	0	1
AT1G34320			Protein of unknown function (D...		Lus10028708 [exp]	1.0	0.8571
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	1.4	0.7653
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	4.5	0.7588
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	10.5	0.7309
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	13.4	0.7240
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	13.9	0.7268
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	15.6	0.7359
AT5G10200			ARM-repeat/Tetratricopeptide r...		Lus10006301 [exp]	16.6	0.7533
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	20.4	0.7211
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10043139 [exp]	21.4	0.7324

Compare expression of checked genes

Lus10006049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.