Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44960 250 / 3e-84 SNARE associated Golgi protein family (.1) AT1G12450 47 / 2e-06 SNARE associated Golgi protein family (.1) AT4G12000 42 / 0.0001 SNARE associated Golgi protein family (.1) AT1G03260 41 / 0.0002 SNARE associated Golgi protein family (.1) AT4G22850 40 / 0.0008 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028709 [exp] 328 / 4e-115 AT1G44960 305 / 5e-105 SNARE associated Golgi protein family (.1) Lus10006674 [exp] 40 / 0.0007 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 40 / 0.0007 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070800 [exp] 274 / 8e-94 AT1G44960 278 / 2e-94 SNARE associated Golgi protein family (.1) Potri.003G159901 [exp] 159 / 1e-50 AT1G44960 152 / 2e-47 SNARE associated Golgi protein family (.1) Potri.003G117400 [exp] 45 / 2e-05 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 40 / 0.0006 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 40 / 0.0006 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10006050 pacid=23147750 polypeptide=Lus10006050 locus=Lus10006050.g ID=Lus10006050.BGIv1.0 annot-version=v1.0 ATGCCTCTTTACGTTGGTGTTCACTCTCTAACATTGGCTCTCTGTTTGCCATTTGCCGTGTTCTTCGAAGCCGCTGCTTCTCTCCTCTTCGGCTTCTTCC CTGCCCTTCTCTGCGTCTTCTCTGCCAAGGTCCTTGGCGCTTCCCTCTCCTTCTGGATCGGCAGGCTAGTGTTCAGGAGATCAAAGGCAGCAGCGGAGTG GGTGCAAAGGAACAAATACTTCAACATCCTGTCGAAAGGGGTCGAGAGAGACGGATGGAGATTCGTCCTTCTGGCCCGATTCTCTCCTGTGCCGTCGTAC ATGATAAACTACGCACTAGCTGCCACAGGAGTTGGGTTCTTAAAGGACTTTCTGCTGCCTACTGTAGTAGGATGCCTGCCGATGATTCTACAGAACACAT CCATAGGCAGCCTTGCTGGTGCAGCCGTCTCTGGGGGAGGTGAGAAGTCCAAGGTTTGGTCGTACTTGTTTCCGTTGCTCGGGATTTCGTCGAGCGTCGT TATTACCTTGAGGATTAGGAAGTACACAACTGACTTCACACTTGTTCAGACTGATGATGACAGTGCCGATTCTTCTCAAGCTGAGAAGAAGAACCAGAAG AAAGTATCATGA
AA sequence Show only first row Show all	>Lus10006050 pacid=23147750 polypeptide=Lus10006050 locus=Lus10006050.g ID=Lus10006050.BGIv1.0 annot-version=v1.0 MPLYVGVHSLTLALCLPFAVFFEAAASLLFGFFPALLCVFSAKVLGASLSFWIGRLVFRRSKAAAEWVQRNKYFNILSKGVERDGWRFVLLARFSPVPSY MINYALAATGVGFLKDFLLPTVVGCLPMILQNTSIGSLAGAAVSGGGEKSKVWSYLFPLLGISSSVVITLRIRKYTTDFTLVQTDDDSADSSQAEKKNQK KVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44960			SNARE associated Golgi protein...		Lus10006050 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Lus10007934 [exp]	2.4	0.8611
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10017183 [exp]	3.5	0.8708
					Lus10006401 [exp]	8.9	0.8899
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	9.6	0.8910
AT1G44960			SNARE associated Golgi protein...		Lus10028709 [exp]	13.4	0.8409
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	15.0	0.8712
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	26.3	0.8621
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	30.7	0.8297
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	33.1	0.8523
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	34.1	0.8352

Compare expression of checked genes

Lus10006050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.