Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34260 1108 / 0 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT4G33240 438 / 5e-128 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 424 / 5e-123 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G71010 395 / 1e-113 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT1G60890 81 / 5e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 80 / 1e-14 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 79 / 2e-14 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 76 / 2e-13 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 73 / 1e-12 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G07960 72 / 3e-12 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028710 [exp] 2617 / 0 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10005173 [exp] 709 / 0 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10035998 [exp] 417 / 9e-121 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10005176 [exp] 370 / 2e-105 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038127 [exp] 369 / 4e-105 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 369 / 7e-105 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10016702 [exp] 344 / 1e-96 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10012689 [exp] 82 / 2e-15 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 82 / 2e-15 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116400 [exp] 1565 / 0 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.019G087000 [exp] 1544 / 0 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.003G072300 [exp] 436 / 4e-127 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.010G113700 [exp] 427 / 4e-124 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.001G163200 [exp] 385 / 5e-110 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.008G128800 [exp] 358 / 2e-101 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.019G015768 [exp] 78 / 3e-14 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G019100 [exp] 78 / 4e-14 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G211200 [exp] 76 / 2e-13 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.004G139900 [exp] 75 / 2e-13 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0016 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10006051 pacid=23147759 polypeptide=Lus10006051 locus=Lus10006051.g ID=Lus10006051.BGIv1.0 annot-version=v1.0 ATGTTGATGGATGGTCTTGCAGAGTTTGTGAAGGGGAAGCAGGAAGAGGATTCGATAAAGCGGAGTAGATCGTGCCAAGCAACGATGAGTTCAGCGCCTT CGTTCTCCATCAACGATCGATTGCTCTCCACTAGCAGTGATTTTTCTGTTGACACTAACTCGTATGGCCAGTATGATCAAATGCATAACACGACTGAAGT TAACGGGGAGGGCAGCGACGGTGAGTTGGTGAAAGATGTAGAAATTACAGAAATTTGCGTCTCGAATGAGGCAAACGAGACTGCTTCTCAGTGTTTGGTG GATGAAATCGATCCGCAAGACTGGGAGGCTCCCGAGCCGGAAGATCCACAGGATGACGTGGAGGATAGTTTGGCGTTTAATGATGTCGACGATGAAGATG AATGTGGTGACGGGACAACGTGGGGGCCAACAGGATCTTTGACTCCATCTCCAGAGCCGAGTCATGAAAGTTACGGGTTCAAAGAAAAGAAACAAAGAGC TATGGAAGAAGTTATAAATGGGAAGTTTAAGGATGTAGTCAAACAGCTGGTTAAGACAGCAGCTGCCGATTCGGGTAAAGAGATGAATAGTTGGGTGGAT ATCGTGACTTCCTTATCGTGGGAAGCTGCGTCGTTCTTGAAACCGAATGCTGTTGAGGGGAAGGTTATGGATCCAGACGGTTATGTGAAAGTAAAGTGCA TTGCAACTGGCTACCCTAACCAAAGTGAAGTAATCAAAGGATTGGTCTTTAAGAAGCATGCGGCTCACAAGCACATGGCTACGGAGTACACGAAGCCGAG ATTGCTGCTACTCCGGGGAGTTCTCGGGCAATCTGCCGGAAGTGGACTGTCATCTTTTAGGACAATGGATCAGGAAAATAACTATTTGAAGTCTCTTATC GATTCGATCGAATCGTGCCACCCGAACATCGTCTTGGTAGAGAAATCGGTTTCTCGAGACGTCCAAGAGTCTATCCTTGCCAAAGGGATAACATTAGTTT ACGATATGAAGCTTCATCGCCTTGAAAGAGTTGCTCGTTGTACTGGCTCGCCGATTCTGTCGTCAGATGCTCTGACGACTGAGAAGTTGAAGCAGTGCGA TTCGTTCCATGTCGAAACATTTGTGGAGGAACATGCTGATGTTGGCGAAGGGGAAAAGAAACCGAGGAAGACTCTGATGTTTTTCAGTGGCTGCCCTACT CGTCTTGGCTGTACCATTTTATTGAAAGGAAGTCACAGCGAGGAACTAAAGAGGATCAAGTATGTGGTGCAGATAGCGGTTATGTGTGCATACCACATGA TTCTCGAGACGTCGTTTCTTGTTGATTGGAAAGCAATGTTCTCCACTATACCGTTGCTCACCGAGGATTCTGAAATGAACCAACAACAGGTTCCTGATTC AAGCCCGAATCCTGTAGAGCCGAGTTCCACGGGTCTTAGGCCGTCTGCAATTGACATTCCGATTGCAAATGGAGATGATTTCATGGACGGTTTTCATGGT TCGGATGTGGATCACGGAGTGACTCCGACTCCGAAATTCCCTTACGTTAAATACAAACCAGCGATATTTACCGGCTTTTCCTCTTTGTCTTCCTCTCTTA GGAGAGTGATCGGTGAGAATTTCTCAGTTCCACCAGCCGATCCGTATCAGTCTCTCTTTAACTATTTAGGATTGAATGGAAAGGAAGAAGATGGCGGTCG GATTACAGAAGAAGTTCCAATTTCGAGTCCGCTTGATGATACTGATAGGGAAGCCAAGGTTGGTTTCGACAGCGAGAAATCAGATGACGGTAAAGAGAAC AAGAAAGATGCGGAGAGTAAGGAAGGTGAAGTACAAAGTAGAGATAGTAATGGAAGTCCAGTGTTGGATTCACAGAGTATATTGGTTTTGATGTCTCGGC GAAATGCATTACGAGGGTCGATATGTGAACACAATCGCTTCTCTCACATAATGTTCTACAAAAATTTCGACATCCCCCTCGGGAAGTTTCTTCGCGATAA TCTATTCAATCAGAAGAGCAGGTGTGCTACTTGCGAAGAACTGCCCGAAATGCACTATTACTACTACGCACACCACGATAAGCAGCTTACTATAAGAGTT AAGCGGCTCGCAAAGCCGTTGCCTGGGGAGGCAGAAGGAAAGATCTGGATGTGGAGTCGATGTGGTAAATGTAAGGCTGTCTCCAGATCTTCTTCGACAA AAAGAGTGTTGATTTCGACTGCTGCTCGAAGTCTGTCTTTCGGCAAATTCTTAGAACTCAGCTTTTCTCACCAGTCTTCGTTTGGTAGATCATCTTCCAG CTGTGGCCACTCTCTGAACAAAGATTTCCTCTACTTCTTCGGATTAGGTCCTCTTGCTGCATTGTTCAAATATTCTCAAGTGACAACCTATACAATCTCT CTGCCGCCTCAGGAATTGGATTTCAGCAATTCGGTTAGACATGAAGGCTTGAGACACGAATTCGAAGATGTATACTCGAAAGGGATACTACTCTTTTCTG GGCTAGCAGACGCTTTGAGAGAGCTGGAGTCTCGATTCGGAAGCAACGTTTTGAAGCTTCAAGGATCGTCGAAAAGATTCTCTGACATCGAAGAGATGCT GAAGCAAGAAATGTCCGAATTTGAAGTGAATATCCATAATGCTGCTGCTGATTTGGGGAAAGCAAGCAGGACCGGTAACAATCTTCTTTCGTTGAATCGG TTGCTGTGGGAGCTTCTTCTGGAATCGTGCGTTTGGGAACAACGTTTGCATTCTATAATTTCGACGAGTGAAGCTGAAGGGAACTTGAAAGACTCAAATG ATGAATCTTCACTCAAGAACGATGTGGGCCCCTCAGCGGACGAGGATACTGATAGAATAAAGTTGGCTGTAGCTGGTTTAAGTAATCAGTCGTCGCGCGA TACCTTTCTGGATCATGAGCACGGGCAATGTCTTGATGGTAGTTTTCAAGGTAACGACTTGACATCATACGGAGTTACACAAGTCGAGAGGGATGTTCCT ATTGCATCGGGGCCCGAGGTCCACGATTCGAGCTTCGTGGTGGACTCATCCAACCGGGGGATGTCTCTGCAGTCTCTAGTGTCGAGCTTGGGGAGCTCGA GTGGGTGGTTCTGGAAGCCGTTTCCGGAAATCCGTGAGATTTACATGGAGGATCTTCACCGAGGGTTCATACCAAAATTCAGGCCGGTTAACGGCTACTA CATCGAGGAACACGTGGCTGCTGCATATCAACTGATTAACGAGGAAGGTCCGAGGCTGCACATACCGCTTGGAAATGGAAACGACATTATAAGGGACTAT GACGGAGAGCTCTCGAGCATCATTGCTTGCGCGCTTGCGTGCTTGAAAGATCTACCGGTGACAGCCGAGTTTTCGAATGATTACTACAGAACGGAAGGGA AGCTGAACGATGGCTTGGCACGTTGGTCGTCTGTTAGTTCGGTCGGTTCTGATTCCGAGTTAATTCAGTCGGTGGTAAGCATATCGTCTGAGGAATCGGT CTTTTCGAGCTTCAACGGATTGAATCTTCTCGAGTTCACCGTCCCTACCGAGAATCTCCACCCTGCAGTTTCCTTAGGGGCTTCCAAAACCCTAGGGAAG GGTAGATACTCGGTTGTCTGTGTGTGTGCGAAGCAATTCCGCGATCTTAGGAACCACTGCTTCCCGTCGGAACTTGATTTCATCGCTTCCCTCAGCCGCT GCAAGATCTGGGATGCTCAAGGTGGCAAGAGCAAGTCCTTCTTCGCTAAAACGCTCGACGAAAGGTTCATCATCAAGGAGATCAAGAAGACCGAGTTCGA GTCCTTCGTCAAGTTTGCACCGCACTATTTCAAGTACATGAACGAGTCCTACGAGCTTGGTAACCAGACGTGCCTTGCGAAAGTCCTTGGCATATATCAG GTGATTGTTCGGCCTCTGAAAGGTGGCAAAGAGACGAGGCACGATCTGATGGTGATGGAGAATCTTACATTTGGTCGCGACATCATCCGTCGCTACGATC TGAAAGGCGCTCTGCATGCGCGTTACACGACAGTCATGAACGGTTCTGGTGAAGTTCTGCTGGACCAGAACTTCGTCGATGACATGTACTTGTCTCCTCT CTACGTTAGCAACCGAGCAAAACGCCTCCTCGAACGCTCGGTTTGGAACGACACGACATTCCTCAATTCTATCAACGTGATGGACTACTCCTTATTCGTC GGGATCGATGTCCAAAGCCAAGAACTCGTGTGTGGCATCATCGATTACCTCAGGCAGTACACATGGGACAAGCAGCTCGAAACATGGGTCAAATCCTCCC TCGTCGTCCCAAAGAACGTTCAACCGACAGTAATTTCCCCTCGGGAGTACAAGAAGAGGTTCCGAAAGTTCATTTCCACTCACTTCCTCAGTGTTCCCGA CGACTGGTGTAAGCCGAAGCCTTGCGAGCCCTGCGTGCTATGTGGTCCTGCCGATCCTTGCCCTCAATAG
AA sequence Show only first row Show all	>Lus10006051 pacid=23147759 polypeptide=Lus10006051 locus=Lus10006051.g ID=Lus10006051.BGIv1.0 annot-version=v1.0 MLMDGLAEFVKGKQEEDSIKRSRSCQATMSSAPSFSINDRLLSTSSDFSVDTNSYGQYDQMHNTTEVNGEGSDGELVKDVEITEICVSNEANETASQCLV DEIDPQDWEAPEPEDPQDDVEDSLAFNDVDDEDECGDGTTWGPTGSLTPSPEPSHESYGFKEKKQRAMEEVINGKFKDVVKQLVKTAAADSGKEMNSWVD IVTSLSWEAASFLKPNAVEGKVMDPDGYVKVKCIATGYPNQSEVIKGLVFKKHAAHKHMATEYTKPRLLLLRGVLGQSAGSGLSSFRTMDQENNYLKSLI DSIESCHPNIVLVEKSVSRDVQESILAKGITLVYDMKLHRLERVARCTGSPILSSDALTTEKLKQCDSFHVETFVEEHADVGEGEKKPRKTLMFFSGCPT RLGCTILLKGSHSEELKRIKYVVQIAVMCAYHMILETSFLVDWKAMFSTIPLLTEDSEMNQQQVPDSSPNPVEPSSTGLRPSAIDIPIANGDDFMDGFHG SDVDHGVTPTPKFPYVKYKPAIFTGFSSLSSSLRRVIGENFSVPPADPYQSLFNYLGLNGKEEDGGRITEEVPISSPLDDTDREAKVGFDSEKSDDGKEN KKDAESKEGEVQSRDSNGSPVLDSQSILVLMSRRNALRGSICEHNRFSHIMFYKNFDIPLGKFLRDNLFNQKSRCATCEELPEMHYYYYAHHDKQLTIRV KRLAKPLPGEAEGKIWMWSRCGKCKAVSRSSSTKRVLISTAARSLSFGKFLELSFSHQSSFGRSSSSCGHSLNKDFLYFFGLGPLAALFKYSQVTTYTIS LPPQELDFSNSVRHEGLRHEFEDVYSKGILLFSGLADALRELESRFGSNVLKLQGSSKRFSDIEEMLKQEMSEFEVNIHNAAADLGKASRTGNNLLSLNR LLWELLLESCVWEQRLHSIISTSEAEGNLKDSNDESSLKNDVGPSADEDTDRIKLAVAGLSNQSSRDTFLDHEHGQCLDGSFQGNDLTSYGVTQVERDVP IASGPEVHDSSFVVDSSNRGMSLQSLVSSLGSSSGWFWKPFPEIREIYMEDLHRGFIPKFRPVNGYYIEEHVAAAYQLINEEGPRLHIPLGNGNDIIRDY DGELSSIIACALACLKDLPVTAEFSNDYYRTEGKLNDGLARWSSVSSVGSDSELIQSVVSISSEESVFSSFNGLNLLEFTVPTENLHPAVSLGASKTLGK GRYSVVCVCAKQFRDLRNHCFPSELDFIASLSRCKIWDAQGGKSKSFFAKTLDERFIIKEIKKTEFESFVKFAPHYFKYMNESYELGNQTCLAKVLGIYQ VIVRPLKGGKETRHDLMVMENLTFGRDIIRRYDLKGALHARYTTVMNGSGEVLLDQNFVDDMYLSPLYVSNRAKRLLERSVWNDTTFLNSINVMDYSLFV GIDVQSQELVCGIIDYLRQYTWDKQLETWVKSSLVVPKNVQPTVISPREYKKRFRKFISTHFLSVPDDWCKPKPCEPCVLCGPADPCPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	0	1
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	1.0	0.8862
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	4.9	0.8421
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	7.7	0.7960
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	9.5	0.7951
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	9.6	0.8343
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10038043 [exp]	9.8	0.7629
AT1G04200			unknown protein		Lus10039377 [exp]	10.7	0.7956
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	13.3	0.8199
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	13.9	0.7433
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	16.5	0.7480

Compare expression of checked genes

Lus10006051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.