Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 912 / 0 lectin protein kinase family protein (.1) AT2G19130 417 / 4e-133 S-locus lectin protein kinase family protein (.1) AT4G32300 352 / 1e-108 SD2-5 S-domain-2 5 (.1) AT5G24080 316 / 6e-99 Protein kinase superfamily protein (.1) AT5G60900 304 / 3e-91 RLK1 receptor-like protein kinase 1 (.1) AT4G00340 290 / 2e-85 RLK4 receptor-like protein kinase 4 (.1) AT2G41890 284 / 8e-84 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT5G35370 285 / 5e-83 S-locus lectin protein kinase family protein (.1) AT1G61550 269 / 6e-78 S-locus lectin protein kinase family protein (.1) AT1G61480 261 / 6e-75 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028711 [exp] 989 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 396 / 2e-124 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10029802 [exp] 385 / 6e-121 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 384 / 6e-121 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10024348 [exp] 365 / 3e-113 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 363 / 1e-112 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 355 / 1e-109 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 354 / 2e-109 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 359 / 3e-109 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115700 [exp] 1027 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 1025 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 1024 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 968 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 965 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 407 / 5e-129 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.010G103300 [exp] 398 / 4e-126 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1) Potri.014G086900 [exp] 385 / 2e-120 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.019G119200 [exp] 383 / 4e-120 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.003G211366 [exp] 374 / 9e-117 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10006052 pacid=23147747 polypeptide=Lus10006052 locus=Lus10006052.g ID=Lus10006052.BGIv1.0 annot-version=v1.0 ATGAGCTTCGAATCTCGAATCCTCGTCATCCCAATTCTTATTTCGCTCGCAGTCACCTTCTCCGCAGCACAAATCACGCCGGGGTCATCCCTCTCCGCAG CGGAGCTCAACCGGACTTGGTCTTCTCCCAACAGCACTTTCTCCGTCGGATTCACACAGGTCGGATCTACCAACTCCTTCGCCGCTGGAATCAACTACTT CGGCGGAGTCCGGATTTGGACAGCCGGAATCGTCGACTCCGGCGGCGCCCTCCGCTTCACCTCCGGCGGAGCCTTGCTGCTAGTCAACGGCTCCGGCTCC ACCGTCTGGAACTCCGGAACCACCGCTACCTCGTTATTGATCGACGATTCCGGAGATCTGGTCCTCAGAAACAGGTCAGGGATAGTATGGTCGAGTTTCG ACAATCCGACGGACACGATCGTCCCGTCGCAGAATTTCACCGTCGGCCAAACCTTAACTTCAGGGGTTTACTCTTTCAGCCTTCTGAGGTCAGGTAATTT AACGTTGACTTGGAATCGGAGCATAGTGTATTGGAATCAAGGTTTGAATTCTTCTGTTAACTCCACCATTTTAGACAATCCAGCTCTAGGGTTACAGCCG ATTGGAGCTGTGGCGATTTCCGATTCGATGTTAAGCAGTCCTTACATTTTCGTATACAGTAACGATTACGCTGAAGGTAGCGATATCCTTAGATTTCTGA AGCTGGATAGTGATGGTAACTTGAGAATCTATAGCTCAGCTAGAGGTAGTGGAACTACCAACATGAGATGGGCAGCTTTGAATGATCAATGTCAAGTATA TGGTTACTGTGGCAACATGGGGATATGCAGCTATAACGTTTCGAGCTCGAACCCTATCTGTGGCTGTCCGTCTCAGAATTTCGAGCCGGTCGATATGAAC GATCGTAGAAAGGGATGTAGAAGGAAAGTAGAGATACAGGATTGTCCAGGCTCCGCTACAATGTTGGAGCTAACTCATGCTAGGTTCTTGACTTACCCGC CCGAGTTATCGTCTCAGGTTTTCTGGGTCGCCATCACCGGTTGTAGGTTGAACTGTCTCCAGAGCGGTTCGTGTCTCGCTTCGACTAGTTTGGGAGACGG GACTGGTTTGTGTTATTTGAAGACGTCTGAGTTCGTTAGTGGCTATCAGAATCCTGCACTCCCCAGTACTTCATATGTGAAGGTGTGTGGGCCCGAGCAG CCGAATCCGACTATCGAAACGGTGGCTGTCGGCGGAATGGAGAGGAAAGGATTGAAGCTTAAAGGATGGAAAGTTGCTCTAATTGCTATTGCTACCATTT GTGGTTTAGTTGCTGCAGAGGCTGGTTTATGGTTTTGGTGCTGTAAGAACGGATCAAAATTCGGTACCGTATCGGCTCAGTACGCGCTTCTCGAGTACGC TTCCGGTGCGCCTGTGCAGTTCTCGTATAAGGAGCTTCACCGTTCTACGAATGGCTTCAAGGAGAAGCTGGGAGAAGGAGGGTTCGGAGCTGTTTATAGA GGCGTCTTAGTGAATAAGACTGTTGTTGCGGTGAAGCAGCTCGAAGGGATCGAGCAAGGCGAGAAGCAGTTTCGAATGGAGGTTGCTACCATAAGCAGCA CTCATCATTTGAATTTAGTGAGGCTGATCGGGTTTTGTTCTGAAGGACGACATCGGTTGTTGGTTTACGAGTACATGCGGAACAGTTCTCTCGACGGATT CCTTTTCCCGGAAGATAATCAGTCCGGCAAGTTCCTGAGCTGGGGGAGTCGGTTCAGGATCGCGGTGGGAACCGCTAGAGGGATCACATACCTTCACGAG GAATGTCGGGACTGTATCGTGCATTGCGACATCAAGCCGGAAAACATCCTCCTGGACGAGAACTACAACGCGAAAGTATCTGATTTTGGACTCGCGAAGC TGATAAACCCCAAGGATCACAGGTACAGAACTTTAAAAAGCGTCCGAGGGACGAGGGGTTACCTAGCTCCAGAATGGCTAGCGAATCTGCCGATAACTTC GAAATCGGACGTGTTCAGCTACGGGATGGTGCTTCTCGAGCTGGTCAGCGGGAGGAGGAACTTTGAGGTGTCGGAGGAGACCAACATGAGGAAGTTCACA GCGTGGGCTTACGACGAGTTCGAGAAGGACAACATAGAAGCCATCATCGACAAACGACTTTACTCTAACTCGGCAGACGATCCCGATCAAATGATGGATA TGGCGCAAGTGAAAAGGGCAATCCAGGTAAGCTTCTGGTGCATCCAGGAACAGCCGTCTCAGAGGCCGACGATGGGGAGGGTGGTGCAAATGCTCGAAGG GATTGCTGAGTTCGAGAAGCCACCAGTGCCTAAGGTACTTACGGAAGGCTCATCCATGAGCGGGACGAGCATCAATGTGAGCAGCAATGTCTCTGCATAT GCTCCATCTGGTCCTGCTCCATCTTCGTCCTCGTCCAACCCGGCCACTACTGGAGGAGGTGGTTCGTCTCGAAGTTTGTCGAAGAATGCGGAGAAGCCTT CTTCGTCGCTGCTGAATTCGGAAGCTTTCCCCCCGGAACCATAG
AA sequence Show only first row Show all	>Lus10006052 pacid=23147747 polypeptide=Lus10006052 locus=Lus10006052.g ID=Lus10006052.BGIv1.0 annot-version=v1.0 MSFESRILVIPILISLAVTFSAAQITPGSSLSAAELNRTWSSPNSTFSVGFTQVGSTNSFAAGINYFGGVRIWTAGIVDSGGALRFTSGGALLLVNGSGS TVWNSGTTATSLLIDDSGDLVLRNRSGIVWSSFDNPTDTIVPSQNFTVGQTLTSGVYSFSLLRSGNLTLTWNRSIVYWNQGLNSSVNSTILDNPALGLQP IGAVAISDSMLSSPYIFVYSNDYAEGSDILRFLKLDSDGNLRIYSSARGSGTTNMRWAALNDQCQVYGYCGNMGICSYNVSSSNPICGCPSQNFEPVDMN DRRKGCRRKVEIQDCPGSATMLELTHARFLTYPPELSSQVFWVAITGCRLNCLQSGSCLASTSLGDGTGLCYLKTSEFVSGYQNPALPSTSYVKVCGPEQ PNPTIETVAVGGMERKGLKLKGWKVALIAIATICGLVAAEAGLWFWCCKNGSKFGTVSAQYALLEYASGAPVQFSYKELHRSTNGFKEKLGEGGFGAVYR GVLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEYMRNSSLDGFLFPEDNQSGKFLSWGSRFRIAVGTARGITYLHE ECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLINPKDHRYRTLKSVRGTRGYLAPEWLANLPITSKSDVFSYGMVLLELVSGRRNFEVSEETNMRKFT AWAYDEFEKDNIEAIIDKRLYSNSADDPDQMMDMAQVKRAIQVSFWCIQEQPSQRPTMGRVVQMLEGIAEFEKPPVPKVLTEGSSMSGTSINVSSNVSAY APSGPAPSSSSSNPATTGGGGSSRSLSKNAEKPSSSLLNSEAFPPEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	0	1
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	1.0	0.9113
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	4.0	0.8468
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	5.9	0.8484
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	6.9	0.8363
AT4G12070			unknown protein		Lus10031257 [exp]	11.0	0.8566
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	11.5	0.8349
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	12.0	0.8558
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	14.8	0.8344
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	21.7	0.8196
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	24.7	0.8485

Compare expression of checked genes

Lus10006052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.