Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71860 428 / 4e-151 ATPTP1, PTP1 protein tyrosine phosphatase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028712 [exp] 604 / 0 AT1G71860 431 / 2e-152 protein tyrosine phosphatase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115400 [exp] 471 / 7e-168 AT1G71860 490 / 2e-175 protein tyrosine phosphatase 1 (.1.2.3) Potri.019G086001 [exp] 215 / 4e-70 AT1G71860 202 / 6e-66 protein tyrosine phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00102 [flax] [poplar] Y_phosphatase Protein-tyrosine phosphatase
Representative CDS sequence Show only first row Show all	>Lus10006053 pacid=23147730 polypeptide=Lus10006053 locus=Lus10006053.g ID=Lus10006053.BGIv1.0 annot-version=v1.0 ATGGCTACTCCTTCTCCGGCCTCCATCCCTACCCCTGCTCACCAGCAGTTCCATTTCTCTCCGGATCTTCCCTCTCTTCCTACTCTCACTCCTGAGCAGC ACGGCTACTGCTCCGATGCGCTACGGATCCTCAAGCAGAAGCTCCAAGCTCCACAGACGATCGCTCAGGAGTTCTCTTATCTGCAGGCGAATAGGATGAC TGCATCACAGATGGCCAGAAGCTGTAAGGTTGCACTTAACAATGTCAACTCGGAGAAGAATCGATATATTGATGTCATACCTTTTGACGAAAACAGGGTT GTTCTTGATGCCTGCAAGGACTATAGATCAGAAGCAAAGGGATACATCAATGCAAGCTTCATCGAGGTCGGGTGGTTTGTTCCGACGCTTGCTGCTCCGT CTGCTAAAGTTTCGAGATTTATAGCTACCCAGGGACCGCTATCGCACACTTTCGAGGACTTCTGGGCAATGGTGATTCAGCATAAATGCCCTGCCATCGT TATGCTCACTCGTTTGGTTGACAATTACAAGACTGCGAAATGTGGTGACTACTTTCAATCAGAAGACGGTCCAAGAGATATCGGAAATATATGCATTGTG ACGAAATGGACTTCGACTACTGAAACCTCATTAGTGTTGCGCAACTTAGAAGCTCGTGACAAAGTGTCAGAAGAAACACCAGTGTCGGTTTTGCACATTC AGTATCCTGAATGGCCTGACCATGGAGTTCCCAACGACACAACGGCTGTCCGCGAAATTTTCAGAAGATTATACCATTTGCCTCCTCATCTCGGCCCGAT AGTCGTCCACTGCAGTGCAGGCATTGGGAGAACAGGAACATACTGCACAATCCACAACACGATCCAGCGAATCCTTGGCGGAGACAAATCCGCCACTGAT CTCACTAATACCGTATCGGTGTTCAGGTCTCAACGAATTGGGATGGTTCAAACCATGGAGCAATATGTATTCTGCTACGAAGCCATCGTTGATGAACTGG AAATCCTCGTCTCGACATCTAACCACTAG
AA sequence Show only first row Show all	>Lus10006053 pacid=23147730 polypeptide=Lus10006053 locus=Lus10006053.g ID=Lus10006053.BGIv1.0 annot-version=v1.0 MATPSPASIPTPAHQQFHFSPDLPSLPTLTPEQHGYCSDALRILKQKLQAPQTIAQEFSYLQANRMTASQMARSCKVALNNVNSEKNRYIDVIPFDENRV VLDACKDYRSEAKGYINASFIEVGWFVPTLAAPSAKVSRFIATQGPLSHTFEDFWAMVIQHKCPAIVMLTRLVDNYKTAKCGDYFQSEDGPRDIGNICIV TKWTSTTETSLVLRNLEARDKVSEETPVSVLHIQYPEWPDHGVPNDTTAVREIFRRLYHLPPHLGPIVVHCSAGIGRTGTYCTIHNTIQRILGGDKSATD LTNTVSVFRSQRIGMVQTMEQYVFCYEAIVDELEILVSTSNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	0	1
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	2.0	0.9422
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	3.6	0.9512
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	4.0	0.9407
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	4.2	0.9271
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	5.3	0.9221
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	6.5	0.9308
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	6.9	0.9147
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	6.9	0.9242
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	6.9	0.9408
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10018560 [exp]	7.1	0.9006

Compare expression of checked genes

Lus10006053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.