Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34190 291 / 2e-91 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 278 / 3e-86 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G32870 186 / 5e-52 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2) AT5G09330 164 / 2e-44 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G04410 159 / 3e-42 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10490 144 / 1e-39 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10500 150 / 5e-39 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G64060 142 / 9e-38 NAC ANAC103 NAC domain containing protein 103 (.1) AT1G65910 142 / 4e-36 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 132 / 3e-35 NAC ANAC057 NAC domain containing protein 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028713 [exp] 893 / 0 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10028824 [exp] 149 / 1e-38 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10023537 [exp] 141 / 9e-37 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10020896 [exp] 140 / 2e-36 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10037939 [exp] 140 / 3e-36 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 140 / 9e-35 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10042284 [exp] 132 / 3e-34 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 131 / 4e-34 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10020794 [exp] 134 / 6e-33 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200100 [exp] 434 / 2e-146 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.002G061300 [exp] 423 / 8e-142 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.010G229900 [exp] 165 / 3e-44 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.008G031800 [exp] 164 / 7e-44 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.005G058900 [exp] 139 / 3e-36 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.007G109100 [exp] 139 / 7e-36 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.017G139500 [exp] 139 / 9e-35 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.017G103701 [exp] 140 / 1e-34 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.015G030200 [exp] 130 / 1e-34 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.004G081000 [exp] 137 / 3e-34 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10006054 pacid=23147753 polypeptide=Lus10006054 locus=Lus10006054.g ID=Lus10006054.BGIv1.0 annot-version=v1.0 ATGCTGGATACGGCGGTATCGAAGCTCGCCGGCGGAGGAGGAGAAGGAATTAGCGCCGGAGACTTCAAGTGGCCGCCTGGGTTCAGGTTCCATCCGACGG ATGAGGAGCTGGTACTGTATTACTTGAAGAGGAAGATCTGTAGGAGGAGGCTGAGGCTCAATGTCATCCGTGAGCTGGATGTTTACAAGTGGGATCCTGA GGATTTGCCTGAACTGGAGGTAGGCAGTGGTTCTTACTCGGTTTATGAAATTCGAAGTATGAGGTTGATGATCAGAGTTTATAGGGGTGGTTCAATACAG GGTTACTGGAAAGCTACAGGAAAAGATCGCAACATCACTTGCAACTCGAGGAGTGTTGGGGTGAAGAAGACCCTAGTTTTCTATCGAGGCCGTGCTCCTA CGGGTGAACGGACCGACTGGGTGATGCACGAGTACACGTTGGATGAGGAGGAACTGAAAAGATGCCCTAATGTCCAGGATTACTATGCACTTTACAAAGT ATTCAAGAAGAGCGGACCTGGCCCTAAAAATGGCGAGCAATATGGAGCACCGTTCCGAGAGGAAGACTGGCTAGACGACGAGACCGCTATCGTTAGTGTC CCAGAAATTACTGTCAGGAAGATAAATGAGTTGCCTCCTGTTTGCAATGAGAAAGCGGTTCCTCGAGTTGAGCCACCGCGTGACGATCTGTTTGACATGA TTAAGGAGATTGTCGAAGAACCTAGACTTGAACCGTTGAATGTGACTGAGTTTTGTCCAATAGTCCAGGTTGGTCGTAAAGAAGTTACAGAGAGCACGAT GGTTAATCCGTTGACAAGAGACATTCCAGAAGCTGGATATAACTATGGGAATTCGGAAATTTCCGAGCTTCACTCATCTGAGGCGCCTGAAGTCAACTCT GCTATTAAGTGGACTGAAGATGATTTTCTGGAAGTGAATGATCTATTTAGCTCTGAACCTACCGTGACGAACGCCGAGGAATCCTCTCCGACTGTAGATT CCTTGTTTGATAGCATTGACGGATTGTCTCAGTTCGAGCTATATCATGATGCAACTATGTTTTTGCGGGACATGGGTCCTCTCGGTCAGCAAACGATTTC ACAATCCTTTGGAGACAACATGGTCGATCAAATCGGTCATCATCAGTATCAGCAACCTGCAGTAAATGAGGCTAACCACGAAACACAGCTGCATCAGGAG GCAAACCAGTTCGATTACTCGTCTTGGCAACCGGATCAGTCTATGCTTAATGAATTACAGCACTTGCTAAATGATCCGCAAGGGAGTGTCCCGACAAACG ATGCAGCTCCTTCTAAACTTGGACCAGAAACTTCAGGTGCGGTCTGTGATTATGTCTCCAACGAAGATCAAGCTGCAAGTACTACTGCCGAAGATGGTAC CGCCGGTTGGTTCTCTTCTGCGATGTGGAACTTCGTCGATTCAATCCCATTCGAACCGGCATTAGCTGCTGAGAGCCCGCTAGTGAACAAAGCTATGGGC CGGATGACGAGCTTCCGCAGACTGAGGATGAACCTCGTAGACGCCAACTGCGTACCGGTCGCTCGTCCCAATAATGGCGCTGCGAATGCGAGAAGGGCAG GTGGAAAGAAAGGCGGTCTGATGTTGATGCTATCAGTCTTGGCAGTCTCACTTGCCGTTCTGTGGGTTTCAATCGGGTAG
AA sequence Show only first row Show all	>Lus10006054 pacid=23147753 polypeptide=Lus10006054 locus=Lus10006054.g ID=Lus10006054.BGIv1.0 annot-version=v1.0 MLDTAVSKLAGGGGEGISAGDFKWPPGFRFHPTDEELVLYYLKRKICRRRLRLNVIRELDVYKWDPEDLPELEVGSGSYSVYEIRSMRLMIRVYRGGSIQ GYWKATGKDRNITCNSRSVGVKKTLVFYRGRAPTGERTDWVMHEYTLDEEELKRCPNVQDYYALYKVFKKSGPGPKNGEQYGAPFREEDWLDDETAIVSV PEITVRKINELPPVCNEKAVPRVEPPRDDLFDMIKEIVEEPRLEPLNVTEFCPIVQVGRKEVTESTMVNPLTRDIPEAGYNYGNSEISELHSSEAPEVNS AIKWTEDDFLEVNDLFSSEPTVTNAEESSPTVDSLFDSIDGLSQFELYHDATMFLRDMGPLGQQTISQSFGDNMVDQIGHHQYQQPAVNEANHETQLHQE ANQFDYSSWQPDQSMLNELQHLLNDPQGSVPTNDAAPSKLGPETSGAVCDYVSNEDQAASTTAEDGTAGWFSSAMWNFVDSIPFEPALAAESPLVNKAMG RMTSFRRLRMNLVDANCVPVARPNNGAANARRAGGKKGGLMLMLSVLAVSLAVLWVSIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	0	1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	1.0	0.9325
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	2.0	0.8776
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	4.2	0.8681
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	4.5	0.8637
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	8.7	0.8240
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	12.0	0.8362
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	12.6	0.8257
AT5G56240			unknown protein		Lus10000240 [exp]	13.3	0.7555
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	13.3	0.8399
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	13.6	0.8512

Compare expression of checked genes

Lus10006054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.