Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71800 288 / 2e-92 CSTF64 cleavage stimulating factor 64 (.1) AT1G60000 66 / 9e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G61030 63 / 1e-10 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G00830 63 / 2e-10 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G73840 62 / 2e-10 ESP1 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) AT4G13850 59 / 2e-10 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G08000 58 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 61 / 7e-10 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60900 61 / 1e-09 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT5G50250 59 / 2e-09 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028714 [exp] 689 / 0 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 443 / 2e-152 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 442 / 2e-150 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10016639 [exp] 64 / 5e-12 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017852 [exp] 66 / 8e-12 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10022551 [exp] 64 / 8e-12 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 63 / 1e-11 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10034685 [exp] 65 / 2e-11 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 63 / 1e-10 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061200 [exp] 352 / 3e-116 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.008G172100 [exp] 68 / 2e-12 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 67 / 5e-12 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G061600 [exp] 63 / 5e-11 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.016G068300 [exp] 64 / 6e-11 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.001G319900 [exp] 61 / 7e-11 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.011G050400 [exp] 64 / 1e-10 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.012G056200 [exp] 64 / 1e-10 AT1G73840 224 / 2e-69 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Potri.005G125500 [exp] 63 / 3e-10 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.001G319800 [exp] 59 / 3e-10 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10006055 pacid=23147766 polypeptide=Lus10006055 locus=Lus10006055.g ID=Lus10006055.BGIv1.0 annot-version=v1.0 ATGGATGGTGCAGTTGGGAACATACCATATGATGCAACTGAAGAGCAGCTCATAGAAATCTGCAGAGAAGTTGGCCCCGTTATATCTTTCAGATTAGTTA TTGACAGAGAAACTGGGAAGCCAAAGGGTTATGGATTTTGCGAATATAAGGATGAAGAGACAGCTCTAAGTGCTCGTCGTAACCTACAGGGTTACGAGAT TAACGGCAGGCAATTACGAGTAGATTTCGCAGAAAATGACAAGAACAATGATAGAAACAAGGAACAACCGTTTGTCTTGCCGCAACTTTCAGATGCCAGA AGACACGGAGCGGGCCCTGCAATCCCTGCGGAATCTGCTCAGCATCAGCCAATAGGTCTGCATATAGCCATGACTGCGGCCACTGTCATGACCGGAGCTT TAGGGGCTACTCAGGCTGCTTTGCCAGGTCAGGCAGCACTACCGAGTGACCCTTTGACCCTTCATTTGGCAAAGATGTCTAGGAATCATTTGAGTGAAGT CATCTCTGAGCTAAAGGTAATGGCCACACAAAACAGGGAAGCAGCACGGCAACTGTTAGTCACGAGGCCTCAACTACCCAAAGCCCTTTTCCAGGCGCAA ATAATGCTAGGAATGGTTACCCCGGAAGTGCTTCAAATGCCAAATATAAGAGCACCAACAAACCAACTGGCATTACTTCCATCACAAGATACGCATCAGG GTCAACAATCCCTTCAAATGTTGACCGGATCAGCTCCTTCGCAGGGGACATATGGAGGCCCGATGAGCCAAATACCAGGCAGTCACTCGTCTTCATTGCC AATTAAATCCGTAGTCCGTGATCAGGTCCCCACATCCTCACTGCATAATATGAACGCTGTTCCTCTACAAGCACCGTTACGTGGAAAACCGGTAGCTCCG CTACTTCCTCCTGTCCATCCTGTTAGACCACCGAATCAGACGGCTGATTTGCCGTTCTTACACCAGCAAGTTCAACGATCATTTGTACATCACTCAGGAC ATGATCCTAGGGAGCCAAGTAGTCGTCCTACAAAGCTTCGGAGGTTGGACGAAGGTAGGAGCACATCTTCCTCAAACCGGGACCATAACATTCCCAACAA TACCGGATTCAGTTCCAGCCAAATGGCACCGGTTAATAGTTCAGCGCCTGCGAAACTACTTCCCAGACCGGAAGTGAAACAAGCGCCTCAGCTAATTACT ATTCTCGTCATTACGATTGCAGCTCCCGTCAGATGTGGAGTCCGCATTGCTCCAGCAAGTGCTGAGCCTCACACCGGAGCAGTTGAGTTCATTACCGCCA GAACAGCAGCAACAGGTGATTCAGCTCCAGCAAGCATTAAGACAAGATCAAATGCAGCCATCATAGCAGCAGGCCAAAGACGAATGGACACTGAGACCGA TATCCAGATAAATTATCAGATAGTTTTGCCTTCCCCAAGTTCATAG
AA sequence Show only first row Show all	>Lus10006055 pacid=23147766 polypeptide=Lus10006055 locus=Lus10006055.g ID=Lus10006055.BGIv1.0 annot-version=v1.0 MDGAVGNIPYDATEEQLIEICREVGPVISFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNNDRNKEQPFVLPQLSDAR RHGAGPAIPAESAQHQPIGLHIAMTAATVMTGALGATQAALPGQAALPSDPLTLHLAKMSRNHLSEVISELKVMATQNREAARQLLVTRPQLPKALFQAQ IMLGMVTPEVLQMPNIRAPTNQLALLPSQDTHQGQQSLQMLTGSAPSQGTYGGPMSQIPGSHSSSLPIKSVVRDQVPTSSLHNMNAVPLQAPLRGKPVAP LLPPVHPVRPPNQTADLPFLHQQVQRSFVHHSGHDPREPSSRPTKLRRLDEGRSTSSSNRDHNIPNNTGFSSSQMAPVNSSAPAKLLPRPEVKQAPQLIT ILVITIAAPVRCGVRIAPASAEPHTGAVEFITARTAATGDSAPASIKTRSNAAIIAAGQRRMDTETDIQINYQIVLPSPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10006055 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	22.6	0.8196
					Lus10010270 [exp]	23.1	0.8196
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	23.8	0.8079
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	31.6	0.8140
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	39.6	0.8048
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	42.9	0.7619
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10000326 [exp]	49.0	0.7943
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	51.2	0.7914
					Lus10041745 [exp]	69.5	0.7937
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10019097 [exp]	69.7	0.7445

Compare expression of checked genes

Lus10006055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.