Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71830 695 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 693 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 625 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 500 / 3e-171 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 479 / 3e-163 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT1G60800 449 / 6e-151 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 446 / 6e-150 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G65240 444 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63710 421 / 2e-140 Leucine-rich repeat protein kinase family protein (.1) AT5G10290 411 / 2e-136 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028715 [exp] 874 / 0 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 711 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 681 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 508 / 3e-174 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10019145 [exp] 448 / 8e-151 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 441 / 6e-148 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10023146 [exp] 421 / 4e-143 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000629 [exp] 421 / 3e-140 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10034350 [exp] 398 / 4e-131 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087700 [exp] 717 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 711 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 698 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 689 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 513 / 1e-176 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.001G206700 [exp] 512 / 5e-176 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.007G094500 [exp] 476 / 5e-162 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.008G110300 [exp] 461 / 3e-156 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 452 / 2e-152 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.008G188800 [exp] 448 / 8e-151 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006056 pacid=23147734 polypeptide=Lus10006056 locus=Lus10006056.g ID=Lus10006056.BGIv1.0 annot-version=v1.0 ATGTACCTCTTTGTCAATCCGTTTAGGGAACTCGGGAATGATGGTTTGTCTGGTCAGCTTGTTCCGGAGCTTCACCAGCTAAAGAATTTGGAATACTTGT CTCTGTACAATAACAGTATAAGTGGTCCAATTCCAAGTGAGCTTGGGAATCTGACTAACTTGATAAGTTTGGATCTTTATTTCAACCGGTTCACTGGACC GATACCGGAATCTTTCGCTAAGCTTTCGAAGCTGAGATTCCTGAGGCTTAATAACAACAACTTGGCCGGTTCGATTCCTACGTCGTTGACTAACATTTCG ACATTACAAGTGCTGGATCTCTCAAACAACAGTCTTTCCGGTTTGGTTCCGGATAACGGTTCCTTCTCAACATTCACTACACTAAGTTTTGATAACAACT TAGATCTCTGCGGACCGGTAATTGGGCGCCCTTGTCCCGGCTCTCCTCCGTTTCCTCCTCCATCTATTCCACAGTCACCAAATTTGTCACGAGGAACAAG AATTGCTACTGGAGTGATAGCTGGCGGAGTTGCAGCCGGTGCAGCTTTGTTGTTTGCTTCCCTAGCAATAGCATTTGCTTTGTGGATGCGAAAAGGGAAA CGTACACACGAAGTTTTCTTTGATGTACTTGCGGAAGAGGATCCAGAAGTTCATATGGGGCAGCTCAAGAGGTTTTCGTTGCATGAATTACAGGTGGCTA CCGATACCTTCAGCAGCAAGAACATTCTAGGCAAAGGAGCGTTCGGTAATGTCTACGAAGGTCGTCTGTCAGATGGATCATTGGTGGCGGTGAAACGACT GAAAGAGGAGCGTACGCCTGGCGGAGAGCTGCAGTTTCAAACCGAGGTTGAGATGCTGAGCATGGCGATCCATCGGAATCTCCTAAGGTTACGTGGCTTT TGCATGACTCCAACCGAAAGATTGCTCGTGTATCCCTTCATGTCAAATGGAAGTCTTGCGTCATGCTTGAGAGGTAACAAAACTAATTGTTGGATTGCTT ATGATGCAAGGAACTGTGATTTGATGATTTTCCGACGCATGCTTTTTGTAGAACGTCCACCGTCGATACCTCCACTTGACTGGCCAACTCGGAGGCTAAT TGCATTGGGATCCGCGAGGGGATTGTCTTATTTGCATCATCATTGTAACCCGAAGATCATTCATCACGATGTAAAAGCTGCAAACATCTTGCTAGACGAC AAATTCGAGGCTGTTGTTGGAGATTTTGGGTTAGCTACCTTGATGGACAACAAGGCTACTCATGTCACTGCTAATGTCTGTGGTACAATGGGCTACATTG CACCTGAATATCTCTCAACTGGGAGATCTTCCGAGAAGATTGATGTTTTCGCGTATGGGATTATGCTCCTCGAGCTAATTACCGGACAGAAACCGTTTGA TCTTGCTCGCCTTGCAAGTGAAAACAACGACCTGTTACTTGATTGGGTGATCGAGCTTCTTAAGGAGAAGAAGCTGGAGATGGTGGTGGACCCCGATCTG GGGAACAAGTTTGTCGAGGCTGAAGTGGAACAGTTGATCCAGGTAGCTCTTGTTTGCACACAAGTTTCTCCGGTGGGCCGGCCAAGGATGTCTGAAGTGG TAAGGATGCTAGAAGGTGATGGTGATGTTCTGACTGAGAGATGGGATGAATGGGAAACTTTCGAAGCGCTCAGGGAAAAGATGAGCATGCCCCCTCCTTC TCCTTCTCCTTCTCGTAATTCGCCTTTGATATTTGATTCGACAGAGAACCAGCAGGCTGTCGAACTGTCTGCTGCACGGTGA
AA sequence Show only first row Show all	>Lus10006056 pacid=23147734 polypeptide=Lus10006056 locus=Lus10006056.g ID=Lus10006056.BGIv1.0 annot-version=v1.0 MYLFVNPFRELGNDGLSGQLVPELHQLKNLEYLSLYNNSISGPIPSELGNLTNLISLDLYFNRFTGPIPESFAKLSKLRFLRLNNNNLAGSIPTSLTNIS TLQVLDLSNNSLSGLVPDNGSFSTFTTLSFDNNLDLCGPVIGRPCPGSPPFPPPSIPQSPNLSRGTRIATGVIAGGVAAGAALLFASLAIAFALWMRKGK RTHEVFFDVLAEEDPEVHMGQLKRFSLHELQVATDTFSSKNILGKGAFGNVYEGRLSDGSLVAVKRLKEERTPGGELQFQTEVEMLSMAIHRNLLRLRGF CMTPTERLLVYPFMSNGSLASCLRGNKTNCWIAYDARNCDLMIFRRMLFVERPPSIPPLDWPTRRLIALGSARGLSYLHHHCNPKIIHHDVKAANILLDD KFEAVVGDFGLATLMDNKATHVTANVCGTMGYIAPEYLSTGRSSEKIDVFAYGIMLLELITGQKPFDLARLASENNDLLLDWVIELLKEKKLEMVVDPDL GNKFVEAEVEQLIQVALVCTQVSPVGRPRMSEVVRMLEGDGDVLTERWDEWETFEALREKMSMPPPSPSPSRNSPLIFDSTENQQAVELSAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	1.4	0.8572
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	3.7	0.8104
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	4.0	0.8468
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	4.9	0.8038
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10013158 [exp]	6.0	0.7862
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	7.9	0.7821
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	9.2	0.7877
AT4G02920			unknown protein		Lus10027996 [exp]	10.5	0.8149
AT5G64230			unknown protein		Lus10033177 [exp]	14.1	0.7957
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	15.8	0.8270

Compare expression of checked genes

Lus10006056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.