Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71830 911 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 907 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 646 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 604 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 571 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 533 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 530 / 0 NIK1 NSP-interacting kinase 1 (.1) AT1G60800 520 / 1e-179 NIK3 NSP-interacting kinase 3 (.1) AT5G65240 483 / 5e-165 Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 481 / 5e-164 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028716 [exp] 865 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 718 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028715 [exp] 698 / 0 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 653 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030898 [exp] 549 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 548 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10000629 [exp] 545 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10005103 [exp] 531 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 503 / 8e-173 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087700 [exp] 932 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 931 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 911 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 905 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 647 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 646 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.017G108000 [exp] 560 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 556 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G188800 [exp] 546 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G110300 [exp] 546 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006057 pacid=23147762 polypeptide=Lus10006057 locus=Lus10006057.g ID=Lus10006057.BGIv1.0 annot-version=v1.0 ATGTCCTTCAGAGTTGGGATCCCACCCTTGGATCTTGGCAATGCTGCTTTGTCTGGTCAGCTTGTTCCACAGCTCGGCCAGCTTAAGAATTTGCAGTACT TGGAACTCTACAGTAACAACATAACTGGTCCAATTCCTAGTGATCTTGGGAATTTGACTAATTTGGTCAGCTTGGATCTTTACTTGAATAGCTTCAATGG TCCCATACCAGCTTCCTTGGGAAAGCTGTCGAAATTGAGATTCTTGCGGCTTAACAACAACAGCTTGACTGGTCCGATTCCTATGTCTTTGACTAACATA ACGGCGTTACAAGTGCTGGATCTCTCGAACAATCGTCTTTCCGGAGTTGTTCCGGATAATGGTTCTTTCTCGCTGTTCACCCCCATAAGTTTTGCCAACA ACTTGGACCTATGTGGGCCAGTCACCGGGCATCCTTGCCCCGGTTCTCCTCCGTTTTCGCCTCCTCCTCCTTTCGTTCCACCACCGCCGATCTCAATACC AGGAGGGGGCAGTGCTACTGGAGCAATAGCCGGCGGAGTTGCTGCTGGTGCAGCGTTGTTATTTGCTGCACCAGCAATAGCATTTGCTCTGTGGCGTCGG AGAAAGCCACAGGAGCTGTTCTTTGATGTACCTGCGGAAGAGGATCCTGAAGTTCATCTCGGCCAGCTTAAGAGGTTCTCGTTACGCGAATTGCAAGTGG CGACGGATACCTTCAGCAACAAGAACATTCTCGGTAGAGGAGGATTTGGTAAGGTCTACAAAGGCCGGCTTGCAGATGGCACTCTGGTGGCTGTCAAGAG ACTGAAAGAGGAGCGTACGCCTGGCGGAGAGTTGCAGTTTCAAACCGAGGTCGAGATGATTAGCATGGCTGTCCATCGAAATCTCTTGAGATTACGTGGC TTCTGCATGACGCCGACTGAAAGATTGCTCGTCTACCCGTACATGGCAAATGGAAGCGTGGCGTCATGCTTGAGAGAACGCCCGCCATCGCAGCCTCCGC TCGACTGGCCAACTCGGAAGCGAATTGCGCTTGGTTCCGCTAGGGGCTTATCGTATCTACACGACCATTGTGATCCAAAGATCATTCATCGAGATGTCAA AGCCGCAAACATCTTGTTAGACGAGGAGTTTGAGGCTGTTGTCGGAGACTTCGGGTTGGCGAAGCTGATGGACTACAAGGACACTCACGTTACTACTGCG GTACGCGGTACGATAGGCCACATTGCTCCGGAGTATCTTTCCACCGGAAAATCGTCCGAAAAGACTGATGTTTTCGGGTACGGAATCATGCTCCTGGAGC TGATTACTGGACAGAGGGCTTTCGATCTTGCTCGCCTTGCAAATGACGACGATGTCATGTTGCTTGATTGGGTGAAAGGGCTACTGAAGGAGAAGAAGTT GGAGATGCTAGTGGATCCCGATCTCCAGGCGAATTACATAGACTCGGAAGTCGAGCAGCTTATCCAGGTTGCTCTTCTTTGCACGCAAGGTTCGCCTATG GAGAGGCCGAAGATGTCGGAGGTGGTAAGGATGCTTGAAGGCGATGGCTTGGCCGAGAGATGGGACGAATGGCAAAAGGTTGAGATCCTCAGGCAAGAGG TGGATCTTGCGCCTCACCATACATCAGATTGGATAGTCGATTCGACAGAGAATCTTCATGCAGTCGAGTTGTCCGGTCCAAGGTGA
AA sequence Show only first row Show all	>Lus10006057 pacid=23147762 polypeptide=Lus10006057 locus=Lus10006057.g ID=Lus10006057.BGIv1.0 annot-version=v1.0 MSFRVGIPPLDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNSFNGPIPASLGKLSKLRFLRLNNNSLTGPIPMSLTNI TALQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISIPGGGSATGAIAGGVAAGAALLFAAPAIAFALWRR RKPQELFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRG FCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTA VRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQANYIDSEVEQLIQVALLCTQGSPM ERPKMSEVVRMLEGDGLAERWDEWQKVEILRQEVDLAPHHTSDWIVDSTENLHAVELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	0	1
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	5.9	0.8646
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	7.3	0.8357
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	8.0	0.8351
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	8.1	0.8415
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	8.1	0.8200
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	14.4	0.8162
					Lus10010435 [exp]	15.3	0.8265
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	16.2	0.8279
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	18.0	0.8344
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	18.5	0.8344

Compare expression of checked genes

Lus10006057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.