Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14290 76 / 5e-16 SBH2 sphingoid base hydroxylase 2 (.1) AT1G22750 67 / 7e-13 unknown protein AT1G69640 55 / 8e-09 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028717 [exp] 149 / 4e-44 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10028725 [exp] 100 / 4e-25 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10006062 [exp] 91 / 8e-22 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10028718 [exp] 76 / 3e-16 AT1G22750 213 / 4e-69 unknown protein Lus10036744 [exp] 72 / 1e-14 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 72 / 1e-14 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10030481 [exp] 64 / 1e-11 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10012832 [exp] 63 / 2e-11 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200000 [exp] 105 / 4e-27 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.002G061400 [exp] 98 / 2e-24 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.002G062600 [exp] 93 / 1e-22 AT1G22750 249 / 3e-83 unknown protein Potri.005G198600 [exp] 69 / 7e-14 AT1G22750 243 / 7e-81 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07343 [flax] [poplar] DUF1475 Protein of unknown function (DUF1475)
Representative CDS sequence Show only first row Show all	>Lus10006058 pacid=23147763 polypeptide=Lus10006058 locus=Lus10006058.g ID=Lus10006058.BGIv1.0 annot-version=v1.0 ATGGCTGCTGTTCTGGTAAACGGGCTAAGAACTCTGTTCTTCGCGCTGAGTTGCTTGGTTGCCGCCACCGTCGTCTACACCGTCTGCACCGATGGCCTCC CCTTCCGCATGGAGCTCCTCACTCCATGGATGGCCGCTACTCTGGTTGATTTCTACGTCAACATCTTCGCCTTGGCGGTAAAATTAGTGTTTTCTATTCA CTGGATCCTGTTCGCTTCAATCTCGTGTTTTGTTCTTCAGTGTTTGGACTCTGGAGATGGAAGTAGAATCGCTGATAGAATTGAGCTGCTCGTTTCAGGT ATGGATTTGCTACAAAGAATCAAACATTGCATCTTCAGTAGTTTGGGTGATTCTGCTGATTTGCTTTGGAAGGTGTGGGTTGCCTATAAGGAAACAAGTT GGTTTAGTGCATCTGCCTGGATAATTCTACTGATATGTTTCGGCAGGCGAGGAACAGCCGGCAAAAACATAACAGTGTGTCCAAAGCACGAGTTGTGGGA CAACGACATAGAACTATGCTACTTGAGCGACGAAGCAATGGGGATCGTGGCTCCGATCCTGGTGTACTGGTTCTACGCAGGATTTTACGAGCTTCTCCCG CCGTTAGATCGTTACAGGCTGCATCCGAGGAAGGAGGAAGAAGATCAGAAGAGGTTGGTGCCGTTTCGTAGTGTTGTCAAGGGCGTTTTGATCCAGCAGC TTGTCCAGGCTACTCTTGGTTCCTTCCTCTTCTATGTAAGTGATCACGATTATTGA
AA sequence Show only first row Show all	>Lus10006058 pacid=23147763 polypeptide=Lus10006058 locus=Lus10006058.g ID=Lus10006058.BGIv1.0 annot-version=v1.0 MAAVLVNGLRTLFFALSCLVAATVVYTVCTDGLPFRMELLTPWMAATLVDFYVNIFALAVKLVFSIHWILFASISCFVLQCLDSGDGSRIADRIELLVSG MDLLQRIKHCIFSSLGDSADLLWKVWVAYKETSWFSASAWIILLICFGRRGTAGKNITVCPKHELWDNDIELCYLSDEAMGIVAPILVYWFYAGFYELLP PLDRYRLHPRKEEEDQKRLVPFRSVVKGVLIQQLVQATLGSFLFYVSDHDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006058 [exp]	0	1
AT5G56820			F-box/RNI-like/FBD-like domain...		Lus10039271 [exp]	7.0	0.6162
					Lus10022267 [exp]	15.6	0.6891
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	18.7	0.6702
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	23.5	0.6301
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10009196 [exp]	33.4	0.5979
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	41.0	0.6317
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	51.1	0.6400
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	54.3	0.6395
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	59.0	0.6305
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Lus10011736 [exp]	64.4	0.5895

Compare expression of checked genes

Lus10006058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.