Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54750 348 / 2e-124 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028720 [exp] 379 / 1e-136 AT5G54750 348 / 2e-124 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418400 [exp] 357 / 1e-127 AT5G54750 354 / 6e-127 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10006060 pacid=23147731 polypeptide=Lus10006060 locus=Lus10006060.g ID=Lus10006060.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCTGGTCCCCGATCCGGCGACGCAATCTTCGCTTCCGTCGAGCGTGTGAATGCTGAGCTGTTCACGCTAACTTACGGAGCGATCGTGAGGC AGTTGCTCACTGATTTGGAGGAGGTTGATGAGGTGAACAAGCAACTTGATCAAATGGGGTACAACATTGGGATTCGGCTGATCGACGAGTTCCTAGCGAA GTCGAATGTCTCTAGATGCGTGGACTTTAAGGAGACGACTGAAACCATTGCCAAGGTGGGGTTCAAGATGTTTCTCGGAGTCGGTGCTTCTGTGACCAAC TGGGATGCTGAGGGGACTTGCTGCAGCATCGTTTTCGACGACAATCCTCTGGTGGACTTTGTCGAGCTTCCTGATACTTGTCAAGGCCTTTACTACTGCA ACGTTCTGAGCGGAGTCATCAGAGGAGCCCTTGAAATGGTGTCGATGAAAACCGAAGTCTCCTGGCTTCGGGATGTGCTGAGAGGCGACGATGTGTTCGA GTTGCAGGTTAAGCTCATAAAGCAAGTTCCGGAAGAGTATCCATACAAGGATGACGAATAA
AA sequence Show only first row Show all	>Lus10006060 pacid=23147731 polypeptide=Lus10006060 locus=Lus10006060.g ID=Lus10006060.BGIv1.0 annot-version=v1.0 MAPAGPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETTETIAKVGFKMFLGVGASVTN WDAEGTCCSIVFDDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVSWLRDVLRGDDVFELQVKLIKQVPEEYPYKDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	0	1
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	2.0	0.8534
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10021742 [exp]	4.9	0.8263
AT5G51510			unknown protein		Lus10027200 [exp]	5.6	0.8544
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	6.5	0.8418
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	8.1	0.7705
AT1G79390			unknown protein		Lus10001838 [exp]	9.0	0.8090
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	9.5	0.7946
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10042661 [exp]	9.6	0.7591
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	12.7	0.8132
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	12.7	0.7789

Compare expression of checked genes

Lus10006060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.