Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34220 379 / 2e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 248 / 7e-77 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 231 / 3e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 199 / 2e-55 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 184 / 4e-50 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 113 / 2e-27 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 110 / 6e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 100 / 6e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 98 / 4e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 93 / 9e-20 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028724 [exp] 795 / 0 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 237 / 2e-72 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 233 / 5e-71 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 236 / 8e-68 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 231 / 4e-66 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 209 / 3e-64 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10034330 [exp] 173 / 9e-50 AT1G25420 218 / 3e-69 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 157 / 1e-42 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 155 / 5e-42 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117100 [exp] 394 / 8e-132 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 378 / 6e-126 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 249 / 3e-79 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 244 / 6e-75 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 234 / 2e-67 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 147 / 3e-39 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 129 / 8e-34 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 131 / 1e-32 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 131 / 2e-32 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 121 / 3e-29 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10006061 pacid=23147727 polypeptide=Lus10006061 locus=Lus10006061.g ID=Lus10006061.BGIv1.0 annot-version=v1.0 ATGTCGATGCTCGACGCCTTCTTCAGTAACAAGGGATTCAAAGCTGCCAAATGTAAAACCCTGCTGAAGCTGACGATTCCTCGGATTAAGCTGCTGAGGA ACAGGAGGGAGATTCAGATCAGGCAGATGCGTCGCGATATTGCCAAGCTTCTGGAGAATGGACAGGAAGCTACTGCTCGAATCCGAGTTGAGCACATTGT GAGAGAAGAGAACATGATGGCTGCTCAAGAAGTCCTCGAGCTCTTCTGTGAGCTTATTGCTGTACGCCTTCCAATCATCGAAGCACAAAGGGAATGTCCT CTGGATTTGAAAGAAGCGATATCCAGTATCTGCTTTGCTGCGCCAAGATGCGCCGACTTGCCGGAGTTGATCCAGGTCCAGATGATGTTTGCCTCCAAAT ATGGGAAGGAGTTCGTTGCTGCTGCAACCGAACTTATGCCCGATTGTGGGGTTAATCGACAGATAGTGGAGCTCCTCTCAGTTCGTGCACCTTCCCCGGA CGTAAAACTGAAACTTCTCAAGGCAATTGCTGTGGAACACGAGTTGGACTGGGATCCCGCTGAGTCCGAAGCTGAACTTTCAAAACCGCATGAAGATTTA TTGAACGGTCCATCACAGTATGTCACTGAGTCGAAGTTGCCTTTCCCGGATGAGAACAAAGAAGAAGAAGAAGCATTAAGCTCCGGACGTGTAGGTGCTA GTCACGAGCTACCCGACACGGATTCCAGTGCTGATGAGCTAGACTTCCCGGATGTTCCCAAAATCACAGTAAGGCCTAATGCAGCTGCTCCTTCTGCACC GGATACTTCTCATTCCGCCGGGACCCATGAGGTTATATTCGAAGAAATGCCAATGGCGTCGATATTGGCATTGAACAAGAACGAAGGTCATGAGTCACAG GAAAAAAAGTTCTTGCCTTTCATCACTACTCCGCAGGCGGCATCAGCATCTGCGCCTACAAGAGAACACAGTTCATCACCGAAGCCTCGAAGTAAGCCCG ACATTGATCTGCGCGATATCTTGGTCTCGGCACAGGCCGCTGCAGAGACTGCAGAGCGTGCAGCAGCAGCAGCCCGATCAGCTGCCACGATTGCCCAGGC GAAGATCAAGGAGCTCTCCAAGATCAACAGCGACAAGTCGCTAGATCTCGAAGCCGACAATCCGTTCACTACCGAGATCGCAAACCAGCCTGACTTGGTG GACAAGGTACACCATCTCAGCCACCAACACTATTCCTTCAAATCTCCAGAGCCCTTCGAGAAAGACGGGATGGTATTTGACTCTCCAAGGGATGAGAGTG TTTTGCGAAGAGAGTCTCCTCGCCCGGAGATGCAACGACTCACTTCCATCGACGAAGACCCTTACCTCTCATACCCCAACTTGTTTGCATCATCATCATC ATCACGCAACTCTGGATCGTCCCCTCGTTTCGATTTGGACCCACGATCACCACATTAG
AA sequence Show only first row Show all	>Lus10006061 pacid=23147727 polypeptide=Lus10006061 locus=Lus10006061.g ID=Lus10006061.BGIv1.0 annot-version=v1.0 MSMLDAFFSNKGFKAAKCKTLLKLTIPRIKLLRNRREIQIRQMRRDIAKLLENGQEATARIRVEHIVREENMMAAQEVLELFCELIAVRLPIIEAQRECP LDLKEAISSICFAAPRCADLPELIQVQMMFASKYGKEFVAAATELMPDCGVNRQIVELLSVRAPSPDVKLKLLKAIAVEHELDWDPAESEAELSKPHEDL LNGPSQYVTESKLPFPDENKEEEEALSSGRVGASHELPDTDSSADELDFPDVPKITVRPNAAAPSAPDTSHSAGTHEVIFEEMPMASILALNKNEGHESQ EKKFLPFITTPQAASASAPTREHSSSPKPRSKPDIDLRDILVSAQAAAETAERAAAAARSAATIAQAKIKELSKINSDKSLDLEADNPFTTEIANQPDLV DKVHHLSHQHYSFKSPEPFEKDGMVFDSPRDESVLRRESPRPEMQRLTSIDEDPYLSYPNLFASSSSSRNSGSSPRFDLDPRSPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	0	1
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	2.0	0.8478
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	2.6	0.8652
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	5.5	0.7936
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	6.0	0.8177
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	6.2	0.8230
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	6.5	0.7985
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	6.9	0.8030
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	9.9	0.7955
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	11.2	0.7800
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	13.6	0.8113

Compare expression of checked genes

Lus10006061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.