Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14290 336 / 1e-117 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 323 / 2e-112 SBH1 sphingoid base hydroxylase 1 (.1) AT2G29390 64 / 1e-12 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 62 / 3e-11 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT4G22753 54 / 3e-08 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 53 / 4e-08 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 52 / 1e-07 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT5G57800 50 / 6e-07 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT3G02590 45 / 3e-05 Fatty acid hydroxylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028725 [exp] 472 / 3e-171 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 327 / 8e-114 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10036744 [exp] 323 / 2e-112 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10030481 [exp] 320 / 6e-111 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10028717 [exp] 318 / 2e-110 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10012832 [exp] 317 / 6e-110 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10006058 [exp] 87 / 2e-20 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1) Lus10001556 [exp] 70 / 8e-14 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 64 / 5e-12 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 384 / 2e-136 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 374 / 1e-132 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 226 / 7e-76 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.001G245300 [exp] 69 / 1e-13 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 65 / 2e-12 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G116500 [exp] 56 / 4e-09 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 56 / 5e-09 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 47 / 4e-06 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.017G116600 [exp] 46 / 1e-05 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006062 pacid=23147732 polypeptide=Lus10006062 locus=Lus10006062.g ID=Lus10006062.BGIv1.0 annot-version=v1.0 ATGGGGACGTTTGCCCCAATAGTGGTGTACTGGCTGTACGCTGGGATGTATCAGATACTTCCTCCGTTAGATCGGTATCGGTTGCACACTAGGAAAGAAG AGGAGAAGAAGAACCTGGTGACTATGAGCAATGTCGTTAAGGGTGTTTTGATTCAGCAGCTTGTCCAGATCGTTGCTGCTCATTTGCTCTTCTTGTTAAC ATCAACCACTGCAGCATCCGAGACGATCACCCAACCCTCAACCCCAATCCAACTACTCCAAATCGTTCTAGCCATGTTCGTGATGGACACATGGCAGTAC TTCGTTCACCGTTACATGCACCAGAACAAGTTCCTATACCGCCACGTCCATTCCCAACACCACCGACTAGTCGTCCCCCAGGCGATCGGAGCCCTCTACA ACCACCCGCTCGAGGGCCTCCTGCTCGACACAGTCGGAGGCGCAATCTCGTTCCTCGTCTCCGGAATGACCGCAAGGACCGGAGTGTTCTTCTTCTGCTT CGCCACCGTGAAAACCGTCGATGACCACTGCGGACTCTGGCTCCCCGGCAATGTCTTCCACTTGTTGTTTACCAACAACTCGGCCTACCACGACATCCAC CATCAATTGCAAGGTACCAAGTACAACTACTCTCAGCCCTTCTTCCCACTATGGGATAAGCTCCTGGGAACCCATATGCCGTACGCTGTCGTAAAGCGCG TCGAAGGTGGGTACGAGGCTAAGTTGATGAAAGACTGA
AA sequence Show only first row Show all	>Lus10006062 pacid=23147732 polypeptide=Lus10006062 locus=Lus10006062.g ID=Lus10006062.BGIv1.0 annot-version=v1.0 MGTFAPIVVYWLYAGMYQILPPLDRYRLHTRKEEEKKNLVTMSNVVKGVLIQQLVQIVAAHLLFLLTSTTAASETITQPSTPIQLLQIVLAMFVMDTWQY FVHRYMHQNKFLYRHVHSQHHRLVVPQAIGALYNHPLEGLLLDTVGGAISFLVSGMTARTGVFFFCFATVKTVDDHCGLWLPGNVFHLLFTNNSAYHDIH HQLQGTKYNYSQPFFPLWDKLLGTHMPYAVVKRVEGGYEAKLMKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006062 [exp]	0	1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10010887 [exp]	1.7	0.9356
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	2.0	0.9289
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	4.0	0.9170
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	6.2	0.9183
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	7.9	0.9000
AT3G16200			unknown protein		Lus10006829 [exp]	10.4	0.9060
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	11.4	0.8798
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	11.4	0.8995
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	13.0	0.9039
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	15.5	0.8897

Compare expression of checked genes

Lus10006062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.