Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009424 [exp] 110 / 1e-27 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10018008 [exp] 41 / 0.0005 AT3G16210 82 / 6e-17 F-box family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006063 pacid=23147745 polypeptide=Lus10006063 locus=Lus10006063.g ID=Lus10006063.BGIv1.0 annot-version=v1.0 ATGGCTCGCTCTTCTCTCCGACTCGAAATTCCTCCACCCGATTCTTTGGTTCACCATAACAAGGAGGACGACAACGAGGAGAATAAGAAAGACTACTCTA CGAATGTTTTGATCCAACACCATCGTGGTGGTCGTAGATGTCACATCAAGTACCGTAACCGGTTGGTTTACTCTTTGCTCTCGTACGACCAGCCGAACGA AAAACTGACCCCGATCCAACCAACGGATCACAAGGTGGAGGGTTTACCGAAAGAGTATGATAACGTAGAGCCCGTTCCTGGGATTAATGTCCGTCTCCAA GACAGCGCTTATCTCGGTTTAGTATCGTCGGATGTTGTGACGGAGTCGCAACGAGTCGAGTATGAACTTTGGAGCGAAAGCCACTTAAGAGACTTTAAGT TCCCTACTAAACATGTTATTCAATCCCACAACTCGGGACCAAGCCGGAGAGTCTCTCTCAAGACCATTGTTTCGTTCGACATTGTCGAGGAAGTTTACGA CCGCTGTCACAAGTTCCCGGCCAAGCTCAAGCGAAGCATGAAGGACGGTGCCCGGATCTATAGGGATCCCATGCGCATTCAGACCACGTCGAAAGAGTTT ATGTTGTCGGCTGTCTTAGGCGACCATAGAGGTGCTTATGAGATATGGACTTTGATGGACTACCGGAGGGCGGAGTCGTGGACTAAGTTGTTTGTCGTTT CCAAATTTGCCTTTCTTCTCATCTCCTAA
AA sequence Show only first row Show all	>Lus10006063 pacid=23147745 polypeptide=Lus10006063 locus=Lus10006063.g ID=Lus10006063.BGIv1.0 annot-version=v1.0 MARSSLRLEIPPPDSLVHHNKEDDNEENKKDYSTNVLIQHHRGGRRCHIKYRNRLVYSLLSYDQPNEKLTPIQPTDHKVEGLPKEYDNVEPVPGINVRLQ DSAYLGLVSSDVVTESQRVEYELWSESHLRDFKFPTKHVIQSHNSGPSRRVSLKTIVSFDIVEEVYDRCHKFPAKLKRSMKDGARIYRDPMRIQTTSKEF MLSAVLGDHRGAYEIWTLMDYRRAESWTKLFVVSKFAFLLIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006063 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	3.2	0.9753
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030411 [exp]	3.5	0.9099
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	4.9	0.9421
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	6.0	0.9421
					Lus10022511 [exp]	6.9	0.9421
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	7.7	0.9421
					Lus10005843 [exp]	8.5	0.9421
					Lus10031558 [exp]	8.9	0.8127
					Lus10010827 [exp]	9.2	0.9421
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	9.8	0.9421

Compare expression of checked genes

Lus10006063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.