Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65930 1806 / 0 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT5G27550 292 / 8e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 293 / 6e-82 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 294 / 1e-81 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 290 / 2e-81 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT4G27180 283 / 6e-81 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 276 / 2e-78 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G05190 273 / 6e-77 ATK5 kinesin 5 (.1) AT4G21270 273 / 7e-77 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT2G47500 274 / 4e-76 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009426 [exp] 2272 / 0 AT5G65930 1796 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10035954 [exp] 303 / 3e-85 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10009427 [exp] 284 / 1e-83 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10005582 [exp] 283 / 3e-78 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 283 / 4e-78 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 280 / 1e-77 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 273 / 1e-75 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10017911 [exp] 259 / 3e-75 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10004487 [exp] 267 / 6e-75 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146700 [exp] 1969 / 0 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.001G455300 [exp] 1959 / 0 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.005G030271 [exp] 277 / 2e-78 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 276 / 2e-78 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 283 / 6e-78 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.014G125700 [exp] 278 / 3e-77 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G416300 [exp] 271 / 7e-77 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.001G436200 [exp] 279 / 1e-76 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 277 / 1e-76 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G011500 [exp] 277 / 1e-76 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF09379 [flax] [poplar] FERM_N FERM N-terminal domain CL0072 [flax] [poplar] PF00784 [flax] [poplar] MyTH4 MyTH4 domain CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0632 [flax] [poplar] FERM_M PF00373 [flax] [poplar] FERM_M FERM central domain
Representative CDS sequence Show only first row Show all	>Lus10006064 pacid=23147739 polypeptide=Lus10006064 locus=Lus10006064.g ID=Lus10006064.BGIv1.0 annot-version=v1.0 ATGAACAAGCTTAAGAAGATGGCCTTACGCGTGATAGCAGAAAGAATGTCGGAAGAAGAAATCGGAGGATTGAAGGAATTGTTTAAGATGATAGATACAG ATAACAGCGGGACAATCACATTTGAAGAGCTCAAGGATGGCTTGCAAAGAGTTGGTTCTGAGCTAATGGAGTCTGAGATCAAAGTGTTAATGGAGGCTGC CGATATAGACAACAGTGGGACACTAGACTACGGTGAATTCCTGGCTGCAACACTGCATCTAAACAAGATGGAAAGGGAAGACAACCTATCTGCGGCCTTC GCATACTTTGACAAAGATGGTAGTGGCTACATCACCATTGATGAGCTCCAACAAGCTTGCAAGGAGTTTGGGGTTGGAGGTGACGCTTTGGAAGAGATGA TCAAAGAAATTGACCAAGACAACGTCGTTGGGCTGCCGTCTCAGGCCCAATTGTTCCCCGGACTGGACCCGGATTCTGCCACAGAATTCAAAAGCCTAGT ATCTCTGTTAAAGCCATGGGCTTCAGGTGACAAATTCCGGATCGGGTCAGAAATACCCTCCATCACCCGCTTACCACCATCGGCTATCGACGCCGACAAC TTCCACCACCACCACCCTCCGCTGCCTCCTCCTCCGCCACCTGACTCTGACCCGCCGGTCAATCAGGTAATATTTATAGAGGCTATGGCGCAGAGTCTAC GGCGGAGTGTGTCTCCATATGCGTCTAGCTACGGTAATGGAAGTGAAGTGAACAGCCATTTGCATTCGCCCTCATCTTTGACGAACGGGGATGGATATGA AAGTGATAGCTCCTACATTTCCTCGACTACACAGATGACTCCTTTAATGGCTGTACCGGCGGAACTAGCAGGCGCTATACCTTTGCTTGAAAGATTCCAG GTTGAGGGGTTCTTAAAAATGATGCAGAAACAGATTCAGTCAACAGGAAGACGTGGATTTTTTTCTAAGAAACCTCCAGGCCCTCAAGTTAAAGAAAAAT TCACGTTTGAGGATATGCTCTGTTTCCAAAAGGATCCTATCCCAACTTCGTTACTTAAACTCAACAGCGATTTGTTAGGGCGAGCAACTAAGCTGTTTCA GATCATTTTGAAGTACATGGGTGTTGATCCGTCTGATCGAGCATCACCAGCGAGTTTGGATGACCGGATTGAACTTGTTGGGAAACTGTACAAGCATACA TTGAAGCGTGCAGAGCTCCGAGATGAACTTTTCGCTCAGATTTCTAAACAAACGAGAAACAACCCTGACAAGCAATATTTGATCAAAGCATGGGAGCTCA TGTATATATGTGCATCCTCAATGCCTCCTAGCAAGGATATCGGTGGATATCTTTCCGAGTATATTCATGAAGTAGCAAATGGTGCTGGTACGCACTCAGA AGTGCAGATCTTAGCCATAAATACATTAAATGCTCTGAAGCGGTCTGTCAAGGCTGGTCCTAGACATACAATACCAGGTCGTGAGGAAATTGAAGCTCTT CTTACTGGTAGAAAGCTTACAACAATAGTGTTTTTCTTGGATGAAACGTTTGAAGAGATCACTTATGACATGGCCACCACCGTCTCTGATTCAGTTGAGG AACTTGCTGGCATAATTAAATTGACGGCATATTCTAGTTTCAGTCTCTCTGAGTGTCGCAAAGTTGTTACAGGCTCCAAGTCACCTGACCCTGGAAATGA GGAGTATATTGGGTTAGATGACAACAAGTATATCGGGGATTTGCTAGCTGAATTTAAGGCAGCCAAAGATCGAAGCAAAGGAGAAATTTTACACTGCAAG CTTATATTCAAGAAAAAGCTATTCCGCGAATCCGATGAAGTTATCGAAGACCCAATGTTTGTGCAATTATCATATGTTCAGTTACAACACGACTATGTAG CAGGGAACTATCCAGTAGGAAGGGATGATGCTGCACAATTGTCTGCACTGCAGATCTTTGTTGAAATTGGATATACTGGCAGCCCAGAATCATGCTCCGA TTGGACAACTCTCCTTGAAAGATTCTTACCCAGGCAAATTGCCATCACGCGAGGAAAACGGGAATGGGAGATGGATATTCTTTCTCGTTATCGTTCGTTG GAAAATCTGACTAAAGATGATGGGAGACAGCAATTTCTACGGATATTGAGGAGTCTTCCTTATGGAAATTCAGTGTTCTTCAGTGTTCGCAAGATTGATG ATCCTATCGGTCTTTTGCCAGGAAGAATAATTCTAGGGATCAACAAACGTGGGGTGCACTTCTTCCGGCCAGTCCCAAAGGAATACTTACATTCTGCCGA GCTGAGAGACATAATGCAGTTTGGCAGTAGCAACACTGCTGTTTTCTTCAAGATGAGGGTTGCCGGTGTTCTTCACATCTTCCAGTTTGAGACCAAACAG GGAGAAGAAATATGTGTTGCCCTTCAAACGCATATAAACGATGTCATGTTGCGTCGATACTCCAAAGCTCGCTCAGCTGCTGGCAGCTTAACGAATGGAG ATGTTTCTAGTAATTTGAAAGCTCCCAATGTGGAGATGTATGAGAAACGTATCCAGGACTTATCAAAGAGCATTGAAGAATTCCAGAGAAATACTGATCA GTTAGTTCAAGAATTGCACGCAAGGCAGGAACAAGAGCTAAGGTTGCAAGATGAACTGGAAGCTTTGAGAGATTCATTCAGGTCCGAACAGCAAAACTTG GCAGTTGTTACAGGTGACCGTGACAGGCTTAAATCCTTGTGCACTGAAAAGGATACAGCTCTTCAGACTGCATTGTCGGAAAAACGGAACATGGAATCAA AGCTGTCTAATCTTGGTGATCTAGCATCAATGAAATCAAGTCTGGCTGCAAAAAATTCCCAGGAGTCTCTCAAGCTGCAAGAAGAGCTGAAACAACAGAA AGAGGAGTTGCGTCTAATGCAAGAATGTTTAGCGAAGCTCAAGAACGAAAACATGCTATTGGAAGAGAAGATGTCCAGATTGGACAAGAAGAAAATTGAA GAGATTGAAGGGCGCGAAAGGAACTTCGATCAAGAACGGAGAGCACTAAAGCTTCGTATGACCGAGCTAGAGAATAAGCTCGAAGTTGCCATCCAAGATT GCGCCATTGCAAAGTCTACCCTGGAAAATCGAGAGGCCGATTATACCGTCTTGCAGAATAATCTGAAAGAATTAGAGGATCTACGAGAAATGAAGGAGGA TATCGATAGAAAGAACGAGCAAACTGCTTCGATCTTGAAAATGCAAGGGGCACAGCTTGCTGAGATGGAAGTGCTTTACAAGGAAGAACAAATACTGCGG AAACGGTACTTCAATACGATCGAAGATATGAAAGGCAAGATAAGAGTGTACTGTCGTGTACGGCCTCTAAACGAGAAAGAAATCGCCGAAAGGGAAAGAC AATTGTTATCGAGCACCGACGAGTTCACAGTAGAACATCCATGGAAGGATGACAAGGTGAAACAGCATCTGTATGATCGCGTCTTCGATGGCAGTGCGTC GCAGGAGAATGTATTCGAAGATACAAGATACTTGGTCCAGTCTGCCGTTGACGGGTACAACGTTTGTATATTCGCCTATGGTCAAACCGGTTCGGGAAAG ACATTTACAATATACGGCTCGGATGGCAATCCCGGACTCACACTAAGAGCCACTGCAGAAATCTTCAACATTATCAAGCGCGACAGCAAGAAATTCTCCT ATTCGCTCAAGGCATACATAGTTGAGCTGTATCAAGATACACTCGTGGACCTTCTACTACCGAAGAGTGCAAAGCCTTCGAGACTCGACATAAAAAAGGA CTCGAAGGGTATGGTCTCTATCGAAAACGTGACAGTCAAGTCAATCTCAACATTCGATGATCTAAAAACGATCATCCAACAAGGATCAGAGCGTCGGCAC ACATCCGGGACTCAAATGAACGAAGAGAGCTCCCGGTCTCACCTGATTCTTTCGGTCGTGATCGAGAGCACAAACCTCCAGACACAGTCCGTTGCAAGGG GAAAGATAAGTTTCGTCGACCTTGCTGGCTCGGAACGAGTGAAGAAATCGGGCTCATCGGGAAACCAACTTAAAGAAGCGCAAAGCATCAATAAATCACT CTCAGCACTCGGTGACGTGATCAGCGCACTTTCCTCAGGCGGTCAGCACATACCGTACCGGAATCACAAACTAACAATGCTGATGAGCGATTCCCTCGGC GGTAATGCCAAGACACTCATGTTCGTAAACGTCTCTCCAGCCGAATCAAGCCTGGACGAGAGCTACAACTCACTAACGTATGCATCGAGAGTGCGAGCCA TAGTCAACGACCCGAGCAAGAACGTGTCGTCTAAGGAGATTGCTCGGCTGAAGAAGCAGATAGCATACTGGAAAGAGCAGGCTGGGAGGAAAGGAGAAGA TGATGATCTGGAAGAGATTCAAGAACATAGAACTCCGCCGAAAGATAGGAGTACTGATGCTCGTTATTTGGTTTGA
AA sequence Show only first row Show all	>Lus10006064 pacid=23147739 polypeptide=Lus10006064 locus=Lus10006064.g ID=Lus10006064.BGIv1.0 annot-version=v1.0 MNKLKKMALRVIAERMSEEEIGGLKELFKMIDTDNSGTITFEELKDGLQRVGSELMESEIKVLMEAADIDNSGTLDYGEFLAATLHLNKMEREDNLSAAF AYFDKDGSGYITIDELQQACKEFGVGGDALEEMIKEIDQDNVVGLPSQAQLFPGLDPDSATEFKSLVSLLKPWASGDKFRIGSEIPSITRLPPSAIDADN FHHHHPPLPPPPPPDSDPPVNQVIFIEAMAQSLRRSVSPYASSYGNGSEVNSHLHSPSSLTNGDGYESDSSYISSTTQMTPLMAVPAELAGAIPLLERFQ VEGFLKMMQKQIQSTGRRGFFSKKPPGPQVKEKFTFEDMLCFQKDPIPTSLLKLNSDLLGRATKLFQIILKYMGVDPSDRASPASLDDRIELVGKLYKHT LKRAELRDELFAQISKQTRNNPDKQYLIKAWELMYICASSMPPSKDIGGYLSEYIHEVANGAGTHSEVQILAINTLNALKRSVKAGPRHTIPGREEIEAL LTGRKLTTIVFFLDETFEEITYDMATTVSDSVEELAGIIKLTAYSSFSLSECRKVVTGSKSPDPGNEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCK LIFKKKLFRESDEVIEDPMFVQLSYVQLQHDYVAGNYPVGRDDAAQLSALQIFVEIGYTGSPESCSDWTTLLERFLPRQIAITRGKREWEMDILSRYRSL ENLTKDDGRQQFLRILRSLPYGNSVFFSVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQ GEEICVALQTHINDVMLRRYSKARSAAGSLTNGDVSSNLKAPNVEMYEKRIQDLSKSIEEFQRNTDQLVQELHARQEQELRLQDELEALRDSFRSEQQNL AVVTGDRDRLKSLCTEKDTALQTALSEKRNMESKLSNLGDLASMKSSLAAKNSQESLKLQEELKQQKEELRLMQECLAKLKNENMLLEEKMSRLDKKKIE EIEGRERNFDQERRALKLRMTELENKLEVAIQDCAIAKSTLENREADYTVLQNNLKELEDLREMKEDIDRKNEQTASILKMQGAQLAEMEVLYKEEQILR KRYFNTIEDMKGKIRVYCRVRPLNEKEIAERERQLLSSTDEFTVEHPWKDDKVKQHLYDRVFDGSASQENVFEDTRYLVQSAVDGYNVCIFAYGQTGSGK TFTIYGSDGNPGLTLRATAEIFNIIKRDSKKFSYSLKAYIVELYQDTLVDLLLPKSAKPSRLDIKKDSKGMVSIENVTVKSISTFDDLKTIIQQGSERRH TSGTQMNEESSRSHLILSVVIESTNLQTQSVARGKISFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLG GNAKTLMFVNVSPAESSLDESYNSLTYASRVRAIVNDPSKNVSSKEIARLKKQIAYWKEQAGRKGEDDDLEEIQEHRTPPKDRSTDARYLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	0	1
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	1.0	0.9586
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	3.5	0.8908
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	4.2	0.9017
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	5.9	0.8893
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	8.7	0.8649
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	8.7	0.8979
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	9.8	0.8985
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	12.7	0.8591
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	13.4	0.8949
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	15.0	0.8785

Compare expression of checked genes

Lus10006064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.