Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35670 309 / 3e-104 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 307 / 1e-103 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 263 / 2e-86 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT4G35310 259 / 2e-84 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 252 / 1e-81 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT3G10660 248 / 3e-79 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G38230 243 / 9e-79 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT2G38910 243 / 1e-77 CPK20 calcium-dependent protein kinase 20 (.1) AT5G04870 242 / 4e-77 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT5G12180 233 / 3e-74 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009427 [exp] 375 / 3e-130 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10017911 [exp] 357 / 3e-123 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10014820 [exp] 350 / 1e-120 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10029547 [exp] 282 / 1e-93 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10039623 [exp] 282 / 1e-93 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10001384 [exp] 258 / 9e-84 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10026559 [exp] 257 / 2e-83 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10022986 [exp] 257 / 2e-83 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10013842 [exp] 256 / 4e-83 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083200 [exp] 320 / 1e-108 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.013G112500 [exp] 319 / 6e-108 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.T012800 [exp] 279 / 1e-92 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.004G207300 [exp] 256 / 5e-83 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.010G244800 [exp] 254 / 4e-82 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.009G168600 [exp] 253 / 9e-82 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.016G066700 [exp] 250 / 3e-80 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G199400 [exp] 250 / 3e-80 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.008G014700 [exp] 245 / 1e-78 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 245 / 2e-78 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006065 pacid=23147740 polypeptide=Lus10006065 locus=Lus10006065.g ID=Lus10006065.BGIv1.0 annot-version=v1.0 ATGAGGAGGTCCGCGCGACCAAGGAAACAAACCCTATCGGTCGTCCCCCACCAGACCGCGAGGCTACGAGATCATTACGTGCTGGGTAAGAAACTGGGGC AGGGCCAGTTCGGGATCACGTACCTTTGCACCCACAAGGCTTCCAACACTGTCTACGCGTGCAAGTCGATCTCGAAGAGGAAGCTCTTGTGCAAGGAAGA TTACGACGATGTATGGCGCGAGATCCAGATCATGCACCACTTGTCGGAGCATCCACATGTGGTGAAGATCAAGGACACGTACGAGGACTCGATGTTCGTT CATTTGGTGATGGAGTTGTGCGTTGGTGGCGAATTGTTCGATAGGATCGTGGCCAAGGGACATTATAGCGAGAAAGAGGCCGCCAAGTTGATCAAGACCA TCGTCAGAGTCGTGGAGACTTGCCATTCTTTGGGTGTGATGCATAGGGACCTTAAGCCGGAGAATTTCTTGTTTGATAACCCTAGCGACGATGCCAAGCT CAAGTCCATCGATTTTGGCCTCTCCATTTTTTTCAAGCCGGGTCGGTACTTTTCTTCCATTTCAAACTCTAATCATGGAGAACATGATTGA
AA sequence Show only first row Show all	>Lus10006065 pacid=23147740 polypeptide=Lus10006065 locus=Lus10006065.g ID=Lus10006065.BGIv1.0 annot-version=v1.0 MRRSARPRKQTLSVVPHQTARLRDHYVLGKKLGQGQFGITYLCTHKASNTVYACKSISKRKLLCKEDYDDVWREIQIMHHLSEHPHVVKIKDTYEDSMFV HLVMELCVGGELFDRIVAKGHYSEKEAAKLIKTIVRVVETCHSLGVMHRDLKPENFLFDNPSDDAKLKSIDFGLSIFFKPGRYFSSISNSNHGEHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	1.0	0.9281
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	2.4	0.9212
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	3.5	0.8875
					Lus10003629 [exp]	4.5	0.8857
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	4.6	0.8946
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	6.6	0.8589
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	8.0	0.8653
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	9.2	0.8419
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	10.1	0.8818
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	10.2	0.8815

Compare expression of checked genes

Lus10006065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.