Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 119 / 4e-33 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT5G06170 117 / 1e-32 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71880 116 / 5e-32 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 115 / 9e-32 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 112 / 6e-31 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 112 / 1e-30 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 112 / 1e-30 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 106 / 2e-28 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 71 / 1e-15 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009428 [exp] 149 / 2e-45 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10017910 [exp] 134 / 2e-38 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10014821 [exp] 128 / 6e-37 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 124 / 1e-34 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018915 [exp] 119 / 4e-33 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 119 / 4e-33 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 117 / 3e-32 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 113 / 1e-30 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 106 / 2e-28 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 119 / 4e-33 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 115 / 2e-31 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 103 / 2e-27 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 64 / 2e-13 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 64 / 2e-13 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006066 pacid=23147749 polypeptide=Lus10006066 locus=Lus10006066.g ID=Lus10006066.BGIv1.0 annot-version=v1.0 ATGGACAGGGGATATCCCTTTATGGGGCCGTGTCGAGCCCTGTTAGCGGACTTGTCGGGGAAAAGTTCACGGAAGACGAGGGTGGCGAACGGATTGTTCT CATTCTTCATGGCCGTCGGGAACATTCTCGGATACGCCGCCGGGTCGTATAGCCATCTCTACAAAATGCTCAAGTTCACCAAAACAGAAGCGTGTGATGT CTACTGTGCGAATCTGAAGACTTGCTTTATCATCTCCATAACTTTGCTCCTCGTTCTGACCGTTTTAGCCTTGTGCAAATAG
AA sequence Show only first row Show all	>Lus10006066 pacid=23147749 polypeptide=Lus10006066 locus=Lus10006066.g ID=Lus10006066.BGIv1.0 annot-version=v1.0 MDRGYPFMGPCRALLADLSGKSSRKTRVANGLFSFFMAVGNILGYAAGSYSHLYKMLKFTKTEACDVYCANLKTCFIISITLLLVLTVLALCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	0	1
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	9.4	0.7536
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028586 [exp]	12.0	0.6782
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10015363 [exp]	19.4	0.6815
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10012927 [exp]	24.2	0.7066
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	28.8	0.7049
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	33.6	0.6671
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	33.7	0.6811
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	41.4	0.6943
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	50.5	0.6834
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	51.4	0.5589

Compare expression of checked genes

Lus10006066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.