Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34420 295 / 6e-90 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G41820 194 / 1e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 155 / 4e-40 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 150 / 2e-38 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G63930 150 / 2e-38 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 147 / 2e-37 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 145 / 8e-37 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17750 145 / 1e-36 AtPEPR2 PEP1 receptor 2 (.1) AT1G08590 144 / 2e-36 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 142 / 9e-36 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009429 [exp] 631 / 0 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10012193 [exp] 191 / 1e-52 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007543 [exp] 189 / 3e-52 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009428 [exp] 168 / 3e-47 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10000814 [exp] 151 / 9e-39 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 149 / 6e-38 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 147 / 2e-37 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013968 [exp] 144 / 2e-36 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 144 / 2e-36 AT1G28440 1372 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084800 [exp] 395 / 5e-128 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G114200 [exp] 392 / 7e-127 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G055400 [exp] 191 / 1e-52 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G051700 [exp] 189 / 5e-52 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 153 / 1e-39 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 152 / 4e-39 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 150 / 1e-38 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 150 / 1e-38 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 148 / 7e-38 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G021700 [exp] 147 / 1e-37 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006067 pacid=23147733 polypeptide=Lus10006067 locus=Lus10006067.g ID=Lus10006067.BGIv1.0 annot-version=v1.0 ATGGCTTCTATCTTTTCCCATACTACCGGTACCGGACAAGGTTTGTCGTTGGCCGTTCTTAACCTCTCAATCGTCTTCCCTCAGATGATTGTATCCTTCG GAAGCGGACCGTGGGACGCGCTATTCGGAGGAGGGAACTTACCGGCATTCGCGTTCGGAGCAGTAGCGGCAACAGTGAGTGGAATACTAGCCCTAACTGT GCTACCATCACCACCTCCAGATGTTCCAGCAAACAAAGTTTCACTTGCAGGAAACCATAGTTGGACTACTTTTGCAGGTGAGATTCCGAGATTCCTTACC GGGTTGGGATCCTTAACGCAACTCTCACTGTCAAACAATCAGTTATCCGGAATCATTCCACAATTCAAAGATTTTGTTACAGTCAACACAACTGGAAATG ACAACCTTGTGGAGAGTAAAAAACCAGTTACCAAAAGACAGAAATCATCATCAGTTGCCAAGGCAGCCATCCTTGCAGCCACTCTATCCGCAATCCTTGC TGTATCGATTGTAGCCCTGGTCGTTCTAATCCTCTCGAGACGCGCCCTCAAAGTCAACCAAGTCAACAACTCCGAGCAAGGGGAAGTCGCAGCTTCTGAT CTTGTCAAACTCCTGACTTGCAGCGCAATCCACAGCTCGAATATCTACTTCTTCAAGGTAATGGAAGCAGTCTCGGACCCTCGAAACGTTATAGTCAGGA CGAGATTCTGCACCTACTACAAGGCCACCATGCCTTCAGGAGCAATCTACCTGGTCAAGAAACTGAACCTGAGTGAGAAAATCTTCCTGATGAACAACCA TAACAGGTTTTCTCAGGAACTCGACGTTCTGGCGAAATTGAGCAATTCCAATGTCATGTCTCCCTTGGCATATTCGTTGACCGAAGAAAGCGCTTACCTC TTCTACGAGAACGCTCCGATGGGATGTTTGTTCGATGTTCTTCATCATCAGAGGGAAAAAACGGTTCTCGATTGGCCTAGCAGGTACAGTATAGCTGTAG GAGTAGCTCAAGGTCTGGCTTCTCTCCATGGCTTTCGGTATGGTCCGATTCTCTTGCTCGACTTGTCGAGCAAGACCGTTCTTTTGAAGTCTCTCAAGGA GCCAGTTATCGGAGATATCGAGCTTTGCAAAGTCATCGATCCCTCGAAGAGTACTGGTAGCATTTCCACTGTTGCTGGCTCTGTGGGATACATCCCTCCA GAATATGCATACACGATGAGAGTGACAGTGGCGGGAAATGTGTACAGCTTTGGGGTGATCCTGCTCGAACTGGTGACGGGGAAGCCAGCAGTGAGCGGAG GGATCGAATTGGCGAAATGGGCGGTCAGCAAGTCGAAGAATCAAGTGAAATGGGATGAGATAACCAACAGTAACATATGGGGAGGAGGATGCTCGGTTGC TGTAAGAAGTCGGATACTTTCTGTTCTTAAGGTTGCTGTCAGTTGCGTCAGTGTGTCGCCAGATTCAAGACCGAAGATGAAGAGTGTGTTAAGGATGCTC CTCAACGCACGATGA
AA sequence Show only first row Show all	>Lus10006067 pacid=23147733 polypeptide=Lus10006067 locus=Lus10006067.g ID=Lus10006067.BGIv1.0 annot-version=v1.0 MASIFSHTTGTGQGLSLAVLNLSIVFPQMIVSFGSGPWDALFGGGNLPAFAFGAVAATVSGILALTVLPSPPPDVPANKVSLAGNHSWTTFAGEIPRFLT GLGSLTQLSLSNNQLSGIIPQFKDFVTVNTTGNDNLVESKKPVTKRQKSSSVAKAAILAATLSAILAVSIVALVVLILSRRALKVNQVNNSEQGEVAASD LVKLLTCSAIHSSNIYFFKVMEAVSDPRNVIVRTRFCTYYKATMPSGAIYLVKKLNLSEKIFLMNNHNRFSQELDVLAKLSNSNVMSPLAYSLTEESAYL FYENAPMGCLFDVLHHQREKTVLDWPSRYSIAVGVAQGLASLHGFRYGPILLLDLSSKTVLLKSLKEPVIGDIELCKVIDPSKSTGSISTVAGSVGYIPP EYAYTMRVTVAGNVYSFGVILLELVTGKPAVSGGIELAKWAVSKSKNQVKWDEITNSNIWGGGCSVAVRSRILSVLKVAVSCVSVSPDSRPKMKSVLRML LNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34420			leucine-rich repeat transmembr...		Lus10006067 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	5.7	0.8769
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	7.2	0.8694
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	13.4	0.8140
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	13.4	0.8564
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	15.1	0.8505
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	17.0	0.8490
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	20.3	0.8488
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	21.7	0.8126
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	22.1	0.8217
					Lus10041664 [exp]	23.2	0.8125

Compare expression of checked genes

Lus10006067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.