Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13320 491 / 6e-167 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55730 489 / 3e-166 ATCAX5 cation exchanger 5 (.1.2) AT1G55720 449 / 4e-150 ATCAX6 cation exchanger 6 (.1) AT5G01490 299 / 1e-92 ATCAX4, CAX4 cation exchanger 4 (.1) AT3G51860 293 / 2e-90 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 293 / 3e-90 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009431 [exp] 653 / 0 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10034853 [exp] 534 / 1e-180 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 530 / 2e-180 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 459 / 1e-153 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10032889 [exp] 319 / 9e-101 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027791 [exp] 288 / 1e-88 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 284 / 9e-87 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 283 / 1e-86 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 265 / 9e-80 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249200 [exp] 523 / 1e-179 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.001G469800 [exp] 481 / 8e-163 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 473 / 8e-160 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.016G115500 [exp] 312 / 9e-98 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 307 / 5e-96 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 284 / 5e-87 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 280 / 2e-85 AT3G51860 490 / 7e-172 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10006068 pacid=23147728 polypeptide=Lus10006068 locus=Lus10006068.g ID=Lus10006068.BGIv1.0 annot-version=v1.0 ATGGAGAAATTGGGACTGGTACGCGAGGAGTTAGATTCCAGCTCGTTGGAATCAGGATACCGCAATGTGGAGCTGGCAAGGATCTCCGATCAACTCCATC TGGATCATCATCATCGTGATAATGCCGCCGTCGCCGTTGTTAGTTCGTGGCCGGAGTTTGTTCTGAGGAGTGTCTGTATAGTGTTGCTCAAAGCCAGGAT CAAACTGTTGCTTCCATTTGGTCCCTTGGCTATCTTCGTCAATTACTTCTATGGAGACCCCGGATGGGTATTCTTCCTCAGCTTGTTAGGAATAACACCA CTGGCAGAACGTCTAGGCTATGCAACCGAGCAGATTGCTTACTACTCGGGACCAACAGTTGGTGGTCTGTTGAATGCAACGTTTGGAAATGCAACGGAGA TGATTGTGTCGGTTTTCGCATTGAAGACTGGAATGATTAGAGTCATTCAGCAGTCTTTGTTAGGATCCATCTTATCGAATTTGCTCATGGTCCTTGGATG TGCCTTCTTCGTCGGTGGAATCGTTCATCACGATAAGAAGGTTCAGGTTTTCAATAAGGCAGCTGCAGCTGTGGACTGCGGGTTTTTATTGGTCTCCGTG ATGGGTATCATCATACCAGCTGTTCTTCATGCAACTAAAACGGAGGTTGAGCTAGGGAAATCGGAGTTATCACTTTCGAGATTCAGCAGTTGCATGATGC TTCTTGCATACGCTGCTTACCTGTTCTTCCAGCTTAAAAGCCATCAAAGCCTCTACAATCCTATTAACCAGGAGGATGTTCTAGACGAAGAACGACACGC TAAAGAAGATGAGGAGGTGCCTGAAATTGCTAAATGGGAAGCGATTTCTTGGCTCGCAATTCTCACCCTCTGGGTCTCTGTGCTGTCTGGGTATCTAGTT GATGCCATTCAGGGAGCGTCTGAATCGTCACACTTGTCAATGGGTTTCATCAATGTGATATTGATTCCGATAGCCGGAAACTCCGCTGCATACGCCACAA CCATCATGTTCGCCATTAAAGATAAGCAAGATATAACTCTTGGGGTCGCCATTGGATCATCGACTCAGATAGCGATGTTTGCGATCCCATTCTATGTAGT GGTTGGATGGCTGGTTGGTCAACCAATGGACTTGAACTTCCACCTCTTTGAGACGGCTACCCTTTTCATTACTGTGGTGATTGTCGCATTTACACTACAG GAAGGAACATCAAGTTACTTTAAAGGATTAATGCTGATGCTTTGCTATTCTATCGTCGGGGCAAGTTTCTACGTACACAGCGATGGCCACAGGATGACGA GGATCTCCAGTGAACTCCTTCTGGATCATCGTAGTGATAATGCAGTGGCCGTCATCCACAGTTCGTGGCTGGAGTTTTTTCTGGGGAGTGTCTGTACTGT GTTGCTGGGAGCCAGAATCAAACTGCTGCTGCCATTTGGTCCTCTGGCTATCATCGTCAATTACTTCTATGGAGATCCTGGATGGGTCTTCTTCCTCAGC TTGTTAGGAATAACACCTCTGGCAGAGCGTCTAGGCTATGCAACCGATGAGGCTAGCCGGAGACTAGTGTTACTGAATCATTTGTTTGGGAATGCAGTTG GTGGTCTGTTAAATGCGACCTTTGGAAATGCAACGGAGATGATCGTGTCAGTTTTCGCGTTGAAGAGTGGAATGATAAGAGTCATTCAGCAGTCTTTGCT GGGATCCATCTTATCCAATTTACTCATGGTCCTCGGATGTGCCTTTTTCGTCGGAGGAATCGTTCATCATGATAAGCAGGTTCAGGTTTTCAACAAGGCA GCTGCACTTGTGGATTGCGGTTTTTTATTCGTGTCGATGATGGGTATAGTAACACCGGCTGTTCTTCATGCGACTAATACAGAGGTTGTGCTCGGAGAAT CGGAGCTATTGCTCTCGAGATTCAGCAGTTGCATGATGCTTCTTGGATATGCTGCTTACTTGTTCTTCCAACTTAAAAGCCATCAAAGTCTCTACAATCC TCTTAATGAGGAGGATGAAAGTCTCAACGTGGAAGAAGAAGAGGTGCCTGAAATTACGAAATGGGAAGCTGTTTCTTGGCTTGCAATTTTAACCCTCGCA GTCTCTGTGCTGTCTGGATATCTTGTTGATGCCATTCAGGGAGCGTCTGAATCATCACACTTGTCGACGGGTTTCATCAATGTGATATTGATTCCGATAG CCGGGAATTCTGCTGCATACGCCACAACCATCATGTTCGCCATCAAAGATAACCAAGATATAACTCTTGGTGTCGCCATTGGATCGTCGACTCAGATAGT CATGTTCGCGATACCATTCTATGTAGTGGTCGGATGGCTGGTGGATCAACCGATGGACTTGAACTTCCATCTCTTCGAGACAGCTACCCTGTTCATCACT GTGGTGATTGTGGCATTTACACTACAGGAAGGAACATCAAGTTACTTTAAAGGATTGATGCTGATGCTTTGCTATTCTATCGTCGGGGCGAGTTTCTATG TACATACCGATGAACGCAGTTAG
AA sequence Show only first row Show all	>Lus10006068 pacid=23147728 polypeptide=Lus10006068 locus=Lus10006068.g ID=Lus10006068.BGIv1.0 annot-version=v1.0 MEKLGLVREELDSSSLESGYRNVELARISDQLHLDHHHRDNAAVAVVSSWPEFVLRSVCIVLLKARIKLLLPFGPLAIFVNYFYGDPGWVFFLSLLGITP LAERLGYATEQIAYYSGPTVGGLLNATFGNATEMIVSVFALKTGMIRVIQQSLLGSILSNLLMVLGCAFFVGGIVHHDKKVQVFNKAAAAVDCGFLLVSV MGIIIPAVLHATKTEVELGKSELSLSRFSSCMMLLAYAAYLFFQLKSHQSLYNPINQEDVLDEERHAKEDEEVPEIAKWEAISWLAILTLWVSVLSGYLV DAIQGASESSHLSMGFINVILIPIAGNSAAYATTIMFAIKDKQDITLGVAIGSSTQIAMFAIPFYVVVGWLVGQPMDLNFHLFETATLFITVVIVAFTLQ EGTSSYFKGLMLMLCYSIVGASFYVHSDGHRMTRISSELLLDHRSDNAVAVIHSSWLEFFLGSVCTVLLGARIKLLLPFGPLAIIVNYFYGDPGWVFFLS LLGITPLAERLGYATDEASRRLVLLNHLFGNAVGGLLNATFGNATEMIVSVFALKSGMIRVIQQSLLGSILSNLLMVLGCAFFVGGIVHHDKQVQVFNKA AALVDCGFLFVSMMGIVTPAVLHATNTEVVLGESELLLSRFSSCMMLLGYAAYLFFQLKSHQSLYNPLNEEDESLNVEEEEVPEITKWEAVSWLAILTLA VSVLSGYLVDAIQGASESSHLSTGFINVILIPIAGNSAAYATTIMFAIKDNQDITLGVAIGSSTQIVMFAIPFYVVVGWLVDQPMDLNFHLFETATLFIT VVIVAFTLQEGTSSYFKGLMLMLCYSIVGASFYVHTDERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	0	1
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	1.0	0.8922
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	3.0	0.8889
					Lus10042279 [exp]	3.2	0.8914
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	3.5	0.8846
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	3.5	0.8751
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	3.7	0.8685
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	4.2	0.8657
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	6.2	0.8441
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	7.1	0.8789
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	7.7	0.8468

Compare expression of checked genes

Lus10006068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.