Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34430 373 / 1e-129 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G25860 325 / 1e-110 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G13930 101 / 6e-25 Dihydrolipoamide acetyltransferase, long form protein (.1) AT3G52200 100 / 2e-24 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G54220 100 / 3e-24 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT4G26910 84 / 5e-19 Dihydrolipoamide succinyltransferase (.1.2.3) AT5G55070 84 / 6e-19 Dihydrolipoamide succinyltransferase (.1) AT3G06850 80 / 2e-17 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009432 [exp] 324 / 1e-114 AT1G34430 312 / 2e-106 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10041467 [exp] 330 / 3e-113 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10034304 [exp] 315 / 6e-107 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10006877 [exp] 107 / 5e-27 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10037617 [exp] 104 / 9e-26 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 102 / 6e-25 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 101 / 1e-24 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10043116 [exp] 84 / 9e-19 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10032632 [exp] 84 / 1e-18 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114300 [exp] 385 / 2e-134 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 381 / 7e-133 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 328 / 4e-112 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 322 / 1e-109 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.001G198000 [exp] 106 / 1e-26 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 104 / 6e-26 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 101 / 7e-25 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.014G154700 [exp] 85 / 3e-19 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.011G089200 [exp] 84 / 9e-19 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1) Potri.010G011300 [exp] 82 / 4e-18 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Representative CDS sequence Show only first row Show all	>Lus10006069 pacid=23147755 polypeptide=Lus10006069 locus=Lus10006069.g ID=Lus10006069.BGIv1.0 annot-version=v1.0 ATGTTGGAAAGCTTGGCGGTTCCAACTTTCAGAGTTGGATACACTATCACTACTGATGCACTTGATGCTCTTTACAAGAAGGTCAAGTCGAAGGGAGTGA CTATGACAGCCCTGCTAGCCAAGGCGACAGCTCTCGCATTAGCCAAACACCCTGTGGTGAATTCCAGCTGCAGAGATGGAAATAGCTTTACATACAATAG CAGCATCAACATCGCTGTCGCGGTAGCCATTGATGGTGGGCTGATCACCCCGGTTCTTCAGGATGCCGATAAGGTCGATCTTTATTCGTTGTCGAGGAAG TGGAAGGAGTTGGTCGATAAGGCCCGAGCCAAGCAGTTGCAGCCTCAGGAGTACAATACAGGTACCTTTACCCTGTCGAACCTAGGAATGTTCGGAGTGG ACCGGTTCGATGCCATTCTTCCACCTGGCACGGGAGCTATTATGGCTGTCGGGGCATCTCAGCCCACGGCAGTTGGTACGAAGGACGGCCGCATTGGCAT CAAGAACCAGATGCAGGTAAACGTGACAGCGGACCATCGAGTCATTTACGGAGCCGACCTAGCTGCCTTCCTGCAAACCTTGGCGCAAATCATCGAGGAC CCGAAAGATCTTACCTTCTAA
AA sequence Show only first row Show all	>Lus10006069 pacid=23147755 polypeptide=Lus10006069 locus=Lus10006069.g ID=Lus10006069.BGIv1.0 annot-version=v1.0 MLESLAVPTFRVGYTITTDALDALYKKVKSKGVTMTALLAKATALALAKHPVVNSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDLYSLSRK WKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASQPTAVGTKDGRIGIKNQMQVNVTADHRVIYGADLAAFLQTLAQIIED PKDLTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	0	1
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	2.8	0.9059
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	4.2	0.9121
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	4.2	0.9134
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	6.7	0.9088
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	7.0	0.9073
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	7.7	0.9239
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	10.5	0.8959
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	10.5	0.8722
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	12.6	0.9015
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	13.0	0.8932

Compare expression of checked genes

Lus10006069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.