Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34355 180 / 2e-45 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) AT5G38840 59 / 2e-08 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 55 / 2e-07 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009434 [exp] 2615 / 0 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10028665 [exp] 158 / 1e-40 AT1G34355 71 / 1e-12 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10005098 [exp] 57 / 1e-07 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 54 / 1e-06 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 52 / 4e-06 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 51 / 8e-06 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114700 [exp] 282 / 3e-78 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.004G111500 [exp] 59 / 3e-08 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 54 / 7e-07 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 52 / 3e-06 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.009G156900 [exp] 43 / 0.0007 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10006070 pacid=23147760 polypeptide=Lus10006070 locus=Lus10006070.g ID=Lus10006070.BGIv1.0 annot-version=v1.0 ATGGCGAGCAGCAGCAGCAAAAGACAATCAGAGAGGAAGATACCTGTGTTCTCGGTCTTCAAGGACCTCTCGATCATCAAGAACATCTTCGTCCTCTCGC CGGAGAAAGACGACGCAGGCAAATGGGAGAAAGCTCCGGAGCTAGAGGAAGGAAGAACGCCGGGAGCTGAAATGGAGGAGGTTTTGACCGTGGGACGTCA TCCGGACTGCTCGATCTTGATGTTTCATCCTAGTGTCAGTCGGCGGCATTTCCAGATCAACGTCAAGCCGTCCACTCGCCAGCTCTTCGTCACCGATCTT GGTTCCGTTCACGGAACTTGGGTTTCGGGGAGGAGAATTGAGCCAGGAGTTCGCGTGGAGGTTGGGGAAGGAGATACGATCGTAGTAGGAGCATCGACGA GAGTGTATCGGTTGAATTGGGTGCCTTTGAGCCGCGCTTACGGAATGCAGAATCCTGCAGCTACTGCTGCTATGGTTGAAGAGCGAGAAGCGATGATTAC AACGCCTCAGAAGGAAGCGCAAGTTAAGGTTAGGGATTCTGACGAAGTGAGGGAAGGTTTGAGTAGGAGACTGGACGGCGGTGGAGTTGCTCAGAAGGTT GCTAGTGAGGAATTTTCTGGTGAAGAAGTGTCAGAGATGGAGGATGGTTGTTATACGATGCCAGGTCTAGATGAAGGTAGCGAGGTCAAGATGCCTCAGA AGGAAGATGCAAACCATCAGTCTATGGATTCTGAGGAAGTTCTCAGCAGTGAGAAGGAGGCTGGGATTTTACAAATAGTGGAAAAGGAAACTCCAGTGAG ATCAGAGCTGCAATCTGAGGTTGATGTTAGCTTAGAATCATTACTGCCAGATAAGGAAGAGGACGATGTAGTCGGTGAAACACCTCAGCTCTATCAGTAT GTGCCATTTCCAGTGGGGAAAGAGGAAATTGGGCGGCTGTACAGAAAGAATGATGAACCAGTGAAAGTTTCACAGTTGGGAATCGGTAGTCCTGCTTTTC CTTTGGTTAAGCAAGATGCATTGCTAGTGATAAAACATGAAGAAGCTCCTGTAAGATCAGAAGGGGAATCTAGTTATTTGAAGCTAACCAATTTGGACTC TGAACCATCAATGATGTATACTCGAGAACATTCGGAAACTGCTGTTGAAGAAGTGGATTCAGAGAGGCAGCAGGTACTTTTAACTGATGAAGAGGAGACG ACTGTCCCCTTGAAAAATGATAATGACCTGGCAGAAGTTTCGTACTTGGGAACTGGTGACTCTGAGTACTATTCTATCAAAGATTCACTAGCAGAAGGAG GGAGCCAAGACGTTTCTGTATTATTCCAAGGCGAATCCAGTGAAGTGGCCAATCTGTACTCCTCTCTACTTTTTTCGGCTGTGAAAGCCCATTTGGACAG GGAGATATCATTGATGAAAAACCGGGAGCATCTAGAAGCTTCTCGTCTTGAAGTGAACGTATCTGTGACAGTTGAGAATCTACTTGAGGCAGACCAGCAG CAGGTGTCTTCTGAGGCAAAGGACGAAACGAGAAGCCTGTCCAGCAGTGCTGTTATTTCTGAATTGGATTGTGGAAGTTCTTCAATGAACAATCCGGAAG GTTTAGAGACTGGTCTTTCTGAATTGGAATGTGAAAATTCAGCAATGAAGAACCCGGAAGGTTTGGAAACTGGTCTTTCTGAATTGGATTGTGAAAGTTC ACCAATGAAAAACCAGGAAGGTTCAGAGATTGGTCTTTCTGAATTGGATTGGGACAGTTCATCAATGAAAAACCAGCAAGGTTCAGAGATTGGTCTTTCT GAATTGGATTGTGAAACTTCGTCAATGAATAACCAGAAAGGCTTAGAGACTGATCTTACTGAATTGGATGCTGTGGATGGGAATCTGTCTAGGACTGAGT CGCAGCATATTTCTCTTGACAAGGAAGACCCAGAAGTCACGGAAGTTCATAATTTGTCTTCTTCGGATGAGAACCTACTTGAGTCTGGCCTGCAGCTACT GTCCCTTGAGGAAAAAGAGGATATAAGCTCTCTGCCTAGTAGTGATAATGTTGTCACAGAAGTAGCATCAGCAGTGCAAACAGATTTCAGGGATGACAGA CCATCACTGATGACGGACCAGAAACATATGGAAATTGGTCTTTCTGATGCAAACTCAGGGAACTTGCCTTTGATGATTGAGAATCTATCTGTAGTTGAGT TTGAGGAGACGCCTTTTGTGGGGAAGGAAGACAATGAGAGTCAGTGTAAAGATGGTGATGAAGTTGAGAAATACGATGAACTGACGAGGAGTCCTGAACG TTATTCTGTTGAAGATGCAGCAACCGAGGAAGGTAATAAAAATGGTTCAGCTGATGTGGAGATTAAGAATGCCGAATTCGATGAACTGATGATAAATCTT GAATGGGATTCTGCTGAAAATGGACCTCCAAAGAGAAGCAGTACCGAAAGCTCAGAGAGGGACATTAGAATGCAAGATTTAGATTCTCTGCTGGTTGTCG AGGCAACTGAAGCTGATCTGGAAACTAGTACGTCACTTGATGCAGACTCCTTGAACGACTTGCAGCAAGGGTCATTTTCCAATGAACCTACAGAAACTTC ACAGCTGGGAGCTGGTAGTTTAGATGTTATGAAGGAGAAAGAGCTCACATTTGACGAACTGAATGAGAGTTCAGGAGGTCAATCATTTGAAGAAGCATCA CCAAAGAGTTCTCCCTTAAGACCACAGATGGCAGTAAGTGATGTGGTGGACTTAGATTCCATCTTTCTTGCTGCAGTTGAATCAGATTTTAACAGCAAAA CTCCACTGAAAGAGGACCAGAGACATTTAGACATGTGTATCTTCAATATTGAGTCCTTCAGCGTGTCTTCCAAAGTGGAAAATCTGGATGCTGCTGCTAC AATTGATCAACAGAATGTTAGTGAGAGCATTGGCGAACAACATAACAGGATACCTGCTTGTCTTTCTTTTGAAGAAGCAGAGACTTCTTTCAGCCTGGAT TTAGTGAAAGACCAAGAACAGAAGCAACTTAGCCTTGCAAACGATGATAGCTACATTCAGGAATTCCTTGTGGATGGACAAGATCAGCAATCCACAGAAG AGCAGAAACTGGAAATGCATCAATTGCAGGATCATAGCTCCCCAGAGAAACCGCAAGTGTACGAGAATGGCAACATTGAAGAAACCCTGGTGGATGAACA GAACCAGCAATCCACAGTAGAGCAAAAGCTGGAAATGCAGGATCAAGTCCACGATAATGGTATGACAACTATCTGCTCTGTATCAGTGGTTACAGAATCT ATAACCTCATCCATGTCAATGGAGGAACTTATCTCAGAGATCGTGGAGAATGAAGAGAGCACAACCCCGCAATCAACTCTTGCTCCCGTACAGAGTTTGG AAGATGGGAAGAGCGAGAGCGTCAAGTTAGTAAAGAGAACAAGGGTACAGCGAATTTGGCTCAGGAAAGGTGAACCTGCTTCAGCTGTTCAGCTCCGGAA AATTGAAATCATGGAGAATATTAAAGGTGATGCTGAAACTTGTTCATCACTAATCCCAAAGCTTCCTCCTTCCCCAGGTTCTAAATCAAGGAAACAACTC CTCACTCCAGACAAGGAGAACCGAAGCCCGAATTTCCATTTACCGTCTAGAACCAGAGGCAAGTTTGAAGGACTCAAAAGCTCCAGTTTAAGTCCAAAGA TCACAGTTACCTCCAAAATCCTGGCAGAAGGGGAAAAGGAGAGCTCTACACCTAAAGAGATTGATCAACAAATGATAGCTACACCATCAACTTCAGCGGC CAAAGTGAAGTTAGGCCTTCAATTGGTGTTAAGGGACAGAATGGGAGAAAGGATGCCCTTACAAAACCTCATTAACCGTTCACCTATGCTAAGCTTTTCT AGGGCTTCACTTAGCAGTGCTTCCACAGGAACGGCTGGTTCTTCCGCAGAGCAGTCTTCTGTTAACAGCATCAAAGGTAGAAAAAAGAGGTGGATTCTGG TGGTCGACACCATCTCTCTGCTGGATAACGGGTCGAGGAAGTCATTGCAGCTTCTACAAGGACTCAGGGGGACTCAGTTGATCATTCCAAGGATAGTCAA GAGTGAGCTCGACTCGTTGAAGACGGCTGGTAGATTGTTCAGAAGAACAACAGAGGCAGCTAAGGTGTTGGAATGGATCGAAGAGTGTAAGTCGGAGTCA AACTGGTGGATTCACGTCCAGAGTTCGGTCGAACTGTCTCCACTGTCGACGCCAACAACTTCTTCACCCGAGTCAGGACCAGCCAGGAAAAGATGGTACA GCCCATTTTCGGCGAGCAGCAACATGGAAATGCCCTCACCGAGACCTAAAGATCACGTCCTTTCAAGTGCCTTGCTCTACAAGAAACTCCACTGCGATGG GAAGGTCGTCCTAATCAGCAAGGATGACAACCTGAAGATCAAAGCCATGGCAGAGGGTTTGATCTGCGAAACGGCTCAGGAGTTCCGCACCAGCTTGGTG AACCCGTTCTCCGAGAGGTTCTTATGGGCCGAGAGCTCTCCCAGAGGACACACTTGGTCTGTTAAAGATGACATAGTTTTGAAGGAAAGGTTTTACCAGA ACCCTACAAGGAAGAAGCTGTCAAGGGGTGAGACTGCCACAGGTCTGAAGCTCATCTTGCTTGACGAATATCGAGATGGATTCCCCTGCAAATCCATCCG AACCGTGTAA
AA sequence Show only first row Show all	>Lus10006070 pacid=23147760 polypeptide=Lus10006070 locus=Lus10006070.g ID=Lus10006070.BGIv1.0 annot-version=v1.0 MASSSSKRQSERKIPVFSVFKDLSIIKNIFVLSPEKDDAGKWEKAPELEEGRTPGAEMEEVLTVGRHPDCSILMFHPSVSRRHFQINVKPSTRQLFVTDL GSVHGTWVSGRRIEPGVRVEVGEGDTIVVGASTRVYRLNWVPLSRAYGMQNPAATAAMVEEREAMITTPQKEAQVKVRDSDEVREGLSRRLDGGGVAQKV ASEEFSGEEVSEMEDGCYTMPGLDEGSEVKMPQKEDANHQSMDSEEVLSSEKEAGILQIVEKETPVRSELQSEVDVSLESLLPDKEEDDVVGETPQLYQY VPFPVGKEEIGRLYRKNDEPVKVSQLGIGSPAFPLVKQDALLVIKHEEAPVRSEGESSYLKLTNLDSEPSMMYTREHSETAVEEVDSERQQVLLTDEEET TVPLKNDNDLAEVSYLGTGDSEYYSIKDSLAEGGSQDVSVLFQGESSEVANLYSSLLFSAVKAHLDREISLMKNREHLEASRLEVNVSVTVENLLEADQQ QVSSEAKDETRSLSSSAVISELDCGSSSMNNPEGLETGLSELECENSAMKNPEGLETGLSELDCESSPMKNQEGSEIGLSELDWDSSSMKNQQGSEIGLS ELDCETSSMNNQKGLETDLTELDAVDGNLSRTESQHISLDKEDPEVTEVHNLSSSDENLLESGLQLLSLEEKEDISSLPSSDNVVTEVASAVQTDFRDDR PSLMTDQKHMEIGLSDANSGNLPLMIENLSVVEFEETPFVGKEDNESQCKDGDEVEKYDELTRSPERYSVEDAATEEGNKNGSADVEIKNAEFDELMINL EWDSAENGPPKRSSTESSERDIRMQDLDSLLVVEATEADLETSTSLDADSLNDLQQGSFSNEPTETSQLGAGSLDVMKEKELTFDELNESSGGQSFEEAS PKSSPLRPQMAVSDVVDLDSIFLAAVESDFNSKTPLKEDQRHLDMCIFNIESFSVSSKVENLDAAATIDQQNVSESIGEQHNRIPACLSFEEAETSFSLD LVKDQEQKQLSLANDDSYIQEFLVDGQDQQSTEEQKLEMHQLQDHSSPEKPQVYENGNIEETLVDEQNQQSTVEQKLEMQDQVHDNGMTTICSVSVVTES ITSSMSMEELISEIVENEESTTPQSTLAPVQSLEDGKSESVKLVKRTRVQRIWLRKGEPASAVQLRKIEIMENIKGDAETCSSLIPKLPPSPGSKSRKQL LTPDKENRSPNFHLPSRTRGKFEGLKSSSLSPKITVTSKILAEGEKESSTPKEIDQQMIATPSTSAAKVKLGLQLVLRDRMGERMPLQNLINRSPMLSFS RASLSSASTGTAGSSAEQSSVNSIKGRKKRWILVVDTISLLDNGSRKSLQLLQGLRGTQLIIPRIVKSELDSLKTAGRLFRRTTEAAKVLEWIEECKSES NWWIHVQSSVELSPLSTPTTSSPESGPARKRWYSPFSASSNMEMPSPRPKDHVLSSALLYKKLHCDGKVVLISKDDNLKIKAMAEGLICETAQEFRTSLV NPFSERFLWAESSPRGHTWSVKDDIVLKERFYQNPTRKKLSRGETATGLKLILLDEYRDGFPCKSIRTV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	0	1
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	2.0	0.9631
AT4G15890			binding (.1)		Lus10001471 [exp]	2.8	0.9600
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	3.2	0.9502
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	3.7	0.9492
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	4.9	0.9500
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	8.1	0.9551
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	8.1	0.9425
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	8.4	0.9418
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	11.5	0.9249
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	12.8	0.9529

Compare expression of checked genes

Lus10006070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.