Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 417 / 3e-142 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 204 / 2e-61 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G51220 87 / 1e-18 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT1G34790 86 / 3e-18 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G20880 86 / 5e-18 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT5G60470 85 / 1e-17 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G66730 85 / 2e-17 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G45260 84 / 4e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G13810 84 / 4e-17 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G08290 82 / 6e-17 C2H2ZnF WIP3 WIP domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009435 [exp] 671 / 0 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10023138 [exp] 197 / 1e-58 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10011495 [exp] 90 / 2e-21 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10004887 [exp] 90 / 2e-19 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10033454 [exp] 87 / 1e-18 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10020923 [exp] 87 / 1e-18 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10020597 [exp] 87 / 3e-18 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10019927 [exp] 87 / 5e-18 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10029525 [exp] 85 / 6e-18 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114600 [exp] 437 / 9e-150 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.019G085400 [exp] 413 / 2e-140 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.007G094100 [exp] 213 / 9e-65 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.004G217100 [exp] 210 / 5e-63 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G143700 [exp] 91 / 4e-20 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 91 / 5e-20 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.001G267900 [exp] 85 / 5e-18 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.003G205000 [exp] 85 / 8e-18 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 84 / 8e-18 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.014G180600 [exp] 85 / 2e-17 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF00096 [flax] [poplar] zf-C2H2 Zinc finger, C2H2 type
Representative CDS sequence Show only first row Show all	>Lus10006071 pacid=23147756 polypeptide=Lus10006071 locus=Lus10006071.g ID=Lus10006071.BGIv1.0 annot-version=v1.0 ATGTCTGGTTTCATGGGGAAGTTGGGTTCTTTGGCTTTTCAGATGTGGGGTTTAGCTAGATCGGTATCGGAGTTCGAACTGCTCGTCGTTAGCATCGTTG ATCATGGTTGTGTAATGGTTAGGGGATTGCTTCATTGGACATCTCCCAAAATGGATCCTAAAGAGGTGCTATGCGGAGAACCATGGGCGAAACCTTCATC CTCAAACGATCCAGACCCGAAGATCTCGTTACAGAACGTACCGTCCCTCATGGATTACGGGTTCAGGATCGATCAACCTTACCAAGACCGTAACGAAAAC AACAACAAAGCTCCAGACTGGGATCCAAGGACTATGCTCAACAACCTTTCATTTCTAGAGCAGAAGATCCACCAACTCCAAGACGTGGTTCACTTGATCA TCGGCCGAAAAGGCCAGGAAGTTCCACCTCTCGGGAGTAGGCCCGATGAGCTCGTCACTCAGCAGCAGCAGCTCGTAACTGCCGATCTAACGTCAATCAT CGTTCAGCTGATATCCACTGCCGGTAGTTTGCTCCCGTCGGTTAAGCACACGCTGACTGCCTCGAATACGATCGGTCAGTTTGAGCAGTTTGGACCGGTT CAACCAAAACCGCCTGCCGGAACTGCTCTAGTTCCGGACCAGACCGATACGATGATGACGGATCACAACTGCTCCACCGAAGAGCACGAAATGAAAGACG AAGAAGACACAGAGGACGGAGAAAATCTTCCTCCCGGTTCGTACGAAATCCTGCAGCTCGAAAAGGAAGAGATCCTCGCGCCGCACACTCACTTCTGCAC CATATGCGGGAAAGGGTTCAAGAGGGACGCCAACCTACGAATGCACATGCGAGGCCACGGAGACGAGTACAAGACCCCCGCAGCGCTCGCAAAGCCCCCG AAAGAAGCCACCGGTTCGGAGCCAGCGATGATCAAGAGATACTCGTGTCCTTTCGCTGGCTGCAAGCGGAACAAGGATCACAAGAAGTTCCAGCCGCTGA AGACGATCCTCTGCGTCACGAACCGCGGCAGGTGCCATACGAAGAAGTTCTCAGTCATCGCGGATCTCAAGACTCACGAGAAGCACTGCGGGAGGGACAA GTGGCTGTGCTCGTGCGGGACAACATTCTCAAGAAAGGACAAGCTTTTCGGCCACATTGCTCTTTTCCAAGGCCACACCCCTGCTATCCCTCCTGACGAA ACCAAAGCCTTATTCGAGAAAGGAGAAGATAGTACTTACATCGAAGCAGCAGCTGCGGCAGCTAACAACAAGGTTGGAATCGGAGCTCTCGATTTCAACT GCCTCGGCTCGAACTCGAACATCATGGACTTCAAGTCAGTACTAGAAGCTGACGATACTGCTGCAGCCACTGCCTGCTTCTCCCAAGGTCATTTTCAGGA GAAATTTCATGAAAAACCTAAAACATAA
AA sequence Show only first row Show all	>Lus10006071 pacid=23147756 polypeptide=Lus10006071 locus=Lus10006071.g ID=Lus10006071.BGIv1.0 annot-version=v1.0 MSGFMGKLGSLAFQMWGLARSVSEFELLVVSIVDHGCVMVRGLLHWTSPKMDPKEVLCGEPWAKPSSSNDPDPKISLQNVPSLMDYGFRIDQPYQDRNEN NNKAPDWDPRTMLNNLSFLEQKIHQLQDVVHLIIGRKGQEVPPLGSRPDELVTQQQQLVTADLTSIIVQLISTAGSLLPSVKHTLTASNTIGQFEQFGPV QPKPPAGTALVPDQTDTMMTDHNCSTEEHEMKDEEDTEDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPP KEATGSEPAMIKRYSCPFAGCKRNKDHKKFQPLKTILCVTNRGRCHTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPPDE TKALFEKGEDSTYIEAAAAAANNKVGIGALDFNCLGSNSNIMDFKSVLEADDTAAATACFSQGHFQEKFHEKPKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	1.0	0.8342
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	2.4	0.7808
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	2.8	0.8230
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	8.0	0.8014
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	8.5	0.8182
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	11.8	0.7930
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	14.8	0.7112
AT4G21580			oxidoreductase, zinc-binding d...		Lus10018450 [exp]	15.7	0.7658
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	17.3	0.7609
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	17.7	0.7744

Compare expression of checked genes

Lus10006071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.