Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71420 469 / 6e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 392 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 379 / 9e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 377 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 376 / 2e-120 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G49170 377 / 6e-120 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 365 / 1e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G04780 364 / 2e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 364 / 7e-117 MEF22 mitochondrial editing factor 22 (.1) AT2G03880 359 / 9e-116 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009437 [exp] 1034 / 0 AT1G71420 753 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 388 / 2e-126 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 390 / 8e-125 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 384 / 2e-124 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 388 / 8e-124 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 381 / 6e-123 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034715 [exp] 374 / 2e-121 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 373 / 2e-120 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 366 / 2e-118 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098800 [exp] 495 / 7e-167 AT1G71420 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 413 / 2e-136 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 413 / 2e-133 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 398 / 4e-131 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 386 / 2e-125 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 379 / 1e-122 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 383 / 8e-122 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 376 / 1e-121 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 379 / 2e-121 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G014800 [exp] 372 / 8e-121 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006073 pacid=23147754 polypeptide=Lus10006073 locus=Lus10006073.g ID=Lus10006073.BGIv1.0 annot-version=v1.0 ATGGCCCGACTTCCCGCTCGAGCGTGGCTTCACTCCATCAGGACTCATTTCTCCACCTTTACACTTCCCTCCACCACGCTACCGCCGCAACTCACTAACC TCCGCGACACTCTCCGCGTGTCCTCCACTCACGGCGAAGTTAGAGACTTAGTTTCCCAATTTTGCAGCCTATCGCCGCCGCCTCCGATCAACTACTCCGA GCACGCATACGCCGCCTTATTCCAAGCATGCGCCCGCCATGGCTGCCTCAACGAAGGCCGGAACCTACACCGTTACTTACTCTCAACCAATCACCTCCCC GCCGACCTCTTCCTCTCCAACCACATCGTCAACATGTACGCCAAGTGTGGAGACTTGGGGCATGCACGCAACCTGTTTGACGAAATGCCCCTGAGAAATA TCGTCACCTGGACAGCTTTGATCTCCGGCTACGCTCTGTATGGTGCAGGGGAAGAATGTTTCTCTCTGTTTCGTGATATGTTGGCAGCGGAGGAGGATTG CCGCCCGAATGAGTTTTCCTTCACTAGCTTGCTCGCTTGTTGTGAGGATTTATACTGCGGGGAGCAAGTACATGGATTGGTTTTGAAAATGGGGTTGGAT TCTAGTGTCTACGTAACTAATGCGATGATTACAATGTATGGCAAAGTCGGTGACTTTGGTTGTGGAGATGCATGGAAGGTGTTCGATGAAATGCAGGTTA AGAATCGTGTTTCTTGGAATTCGATGATTTCCGTGTTTCAGATTAGGAGACTGTTTGCGAAAGCCGTTGGCTTGTTTGGTGAAATGGTTACGAAAGGAAT CGGATTTGATCGTGCAACGTTGCTTAGTGTCATTGCTTCATTGAGTGGCAGTGAGAATAGTGTTAGCCATTGTAATCAGGTGCATTGTGTTTGTATCAAG GCAGGGTTTACCTCAGAGATTCAGGTCGCTACTTCATTACTGAAAGCTTACTCAGTAGCTCGAAGCGACCCTGACGAATGCTTGAGACTCTTCATGGAGA TGGATGGCAATCGAGATACTGTTTCGTGGACGACGATTATCACTGCTTTTTCGGAACATAAGCCCGAAGAATCGTTCTTTCTGTTCAGAGAGCTTATAAG GGAGGAAGGGCGGCTATCGCCGGATTCGGTCACATTTTCTTTCGAAGATGGATTAGCAAAGGGGATCGAGATTTTCGATTCGATGTATGGGAATCACGGT ATTTCTCCTGAACTGGATCATTATGCATGTATGATTGATATCCTCGGGCGAGCTGGTCGTCTTTCTGAAGCTAAGGAGCTTATTAGCAGCATGCCAGTGG AGCCTGATTCCGTCATTTGGAGTTCACTTCTCGGATCGTGCAGGAAGCACGGGAACACAGAATTAGCCAGATTTGCTGCTGATAGATTAAAAGAGCTAGA CCCTGATAATTCGTTAGGCTATGTTCAAATGTCGAACATGTACTTCGTAGGCGGTAGTTACAACGAAGCCGGACAAGTTAGAAAAGAAATGAAGAGCTCA AAGGTGATGAAAGAGCCTGGTTTGAGCTGGATCGAGATTGGAAACGAAGTGCATGAGTTTGCATCGGGAGGTAGACAGCATCCTGATCGAGAAGCTATAT ACTTAAAGCTTGATGCTCTTGTTGCGGAGCTAAGAGCGAAAGGGTACCTTCCCGATACGAGCTTGTCGTTTCATGATATAGACGAGGAACATAAGGAACA GGAAGTGTGTCGTCACAGCGAGAAGCTAGCTCTGGCATTTGCTTTGATTAAAGGCACTGAAAGAAGTTCAGGTGGAGTGATAAGGATTGTGAAGAATATA CGAATCTGTGTGGACTGTCATAACTTCATGAAGTTGGCATCAGGTGTTCTTGAGAAGGAGATTGTGGTTAGAGACTCGAACCGGTTCCACCATTTCGAGA ATGAGAAGTGCTCTTGCAGTGACTACTGGTAA
AA sequence Show only first row Show all	>Lus10006073 pacid=23147754 polypeptide=Lus10006073 locus=Lus10006073.g ID=Lus10006073.BGIv1.0 annot-version=v1.0 MARLPARAWLHSIRTHFSTFTLPSTTLPPQLTNLRDTLRVSSTHGEVRDLVSQFCSLSPPPPINYSEHAYAALFQACARHGCLNEGRNLHRYLLSTNHLP ADLFLSNHIVNMYAKCGDLGHARNLFDEMPLRNIVTWTALISGYALYGAGEECFSLFRDMLAAEEDCRPNEFSFTSLLACCEDLYCGEQVHGLVLKMGLD SSVYVTNAMITMYGKVGDFGCGDAWKVFDEMQVKNRVSWNSMISVFQIRRLFAKAVGLFGEMVTKGIGFDRATLLSVIASLSGSENSVSHCNQVHCVCIK AGFTSEIQVATSLLKAYSVARSDPDECLRLFMEMDGNRDTVSWTTIITAFSEHKPEESFFLFRELIREEGRLSPDSVTFSFEDGLAKGIEIFDSMYGNHG ISPELDHYACMIDILGRAGRLSEAKELISSMPVEPDSVIWSSLLGSCRKHGNTELARFAADRLKELDPDNSLGYVQMSNMYFVGGSYNEAGQVRKEMKSS KVMKEPGLSWIEIGNEVHEFASGGRQHPDREAIYLKLDALVAELRAKGYLPDTSLSFHDIDEEHKEQEVCRHSEKLALAFALIKGTERSSGGVIRIVKNI RICVDCHNFMKLASGVLEKEIVVRDSNRFHHFENEKCSCSDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10006073 [exp]	0	1
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	3.5	0.8343
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	8.9	0.7853
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	12.0	0.7883
AT3G04160			unknown protein		Lus10021983 [exp]	15.0	0.7694
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	16.4	0.7892
AT2G24990			Serine/threonine-protein kinas...		Lus10017927 [exp]	22.0	0.7134
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	22.3	0.7970
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	25.3	0.7655
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	37.5	0.7393
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10015414 [exp]	44.6	0.7419

Compare expression of checked genes

Lus10006073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.