Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 389 / 5e-132 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 301 / 6e-98 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 287 / 3e-94 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 271 / 8e-87 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 201 / 5e-61 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G35625 171 / 9e-51 RING/U-box superfamily protein (.1) AT2G17450 66 / 2e-12 RHA3A RING-H2 finger A3A (.1) AT3G19910 65 / 2e-11 RING/U-box superfamily protein (.1) AT1G20823 63 / 2e-11 RING/U-box superfamily protein (.1) AT3G55530 64 / 3e-11 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014823 [exp] 489 / 4e-169 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 466 / 1e-162 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 415 / 3e-142 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10000053 [exp] 219 / 6e-70 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 207 / 6e-63 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 205 / 3e-62 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10022743 [exp] 67 / 1e-12 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10000513 [exp] 66 / 8e-12 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10002706 [exp] 66 / 1e-11 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 471 / 1e-164 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 412 / 4e-141 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 202 / 9e-62 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.003G176500 [exp] 72 / 2e-13 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.006G190500 [exp] 70 / 1e-12 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 66 / 1e-11 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 64 / 1e-11 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.010G201500 [exp] 65 / 2e-11 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.014G053500 [exp] 66 / 3e-11 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 66 / 4e-11 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10006074 pacid=23147742 polypeptide=Lus10006074 locus=Lus10006074.g ID=Lus10006074.BGIv1.0 annot-version=v1.0 ATGGTGAATCCCGAGCTTCTTCTTCTTGTGGGTTTGTTAGCTTGTTCTTGCTGTTTCGTCATGACCTCCGCCAGTGTCGTTCTGATGGGGGATAACGTCA CCATGGCTTTCGACGACATCGAAGCAAATTTCGTGGTGCCAGTGAAGGGTGCTGGTGAATGTGGAGTGTTATATGTAGCTGAGCCGCTGGATGCTTGTTC GAAATTGAGTAATGAAGTTATTGATGGAGATGAGAATAATTCTTCTACTACTAGATCTTCGCCGTTTGTGCTGATTGTTAGAGGAGGAGGGTGTAGCTTT GAAGATAAAGTTAGAAGAGCTCAGGCAGCTGGGTTTCGAGCTGCGATTGTTTACGATGATGAAGATGGTGGCTTACTTGTTGCAATGTCAGGGAATTCGG CAGGCATAAGCATTCACGCAGTCTTCGTCACTAAATCATCAGGCGAAACACTAAAGAACTACGCTGGATCGACCGACATAGAGATATGGATTATCCCCAG CTATGAGGATTCGGCTTGGTCGATCATGGCGATCTCGTTCATTTCTCTGCTGGCCATGTCAGCAGTCATGGCCACTTGTTTCTTTGTCCGGAGGCATCGT ATAAGAAGGGAACGCCCTCGATCTTCTCGCGGCATTAGGGAGTTCCACGGGATGAGCAAGCGCCTCGTTAAAGCAATGCCGAGCCTGAATTTTACGACTG TTCAGGAGGATAACTGTACTTCGATGACTTGTGCTATCTGCCTCGAAGATTATAGCGTTGGCGAAAAGATCCGGATTCTGCCTTGTCGACACAAGTTCCA TGCTTTCTGTGTCGATTCATGGCTTACAACATGGAGAACCTTCTGTCCCGTGTGCAAAAGAGACGCAAGAACTAGTACAGGAGAGCCACCAGCATCTGAA TCTACACCATTGCTGTCATCAAGCGCTTCTTCGTTCGCTTCGTCTTCAGTCCTCTCATCCTTTAGATCTACAACATCATCAGCTATAAGAATCGGTCAGC CATCCCGATCCCCATCAGTCTCGCATTTCCCTTCCTATTCTGGCACCACTCCCTACGGCCAGCAGTCCATCGGATCGTGTCACCAATCCCTGTATTCCCT TAGCATGAGCCGCAGCAACGCTGATCTTAGGAACATGTCCTCACACCGTTCTTCCCACTTGATCTCGTCCTACGGGGGGTACCCTTCCATATCACCCATG AACGCGGTGAGATATCTCACGTTGTATAACAACCCGAGTCCCAGCAACGCCTCCCCGAGCCTCCTAGCCGGTGGCTCCACAAGTTATCAGCCGCGGCCAC TGCATTGCAGCGAGTCTGCTGCGAGCTTCTCCCCTTTCGCTTCTACTCATTCCCTTCCAGACTGTTAG
AA sequence Show only first row Show all	>Lus10006074 pacid=23147742 polypeptide=Lus10006074 locus=Lus10006074.g ID=Lus10006074.BGIv1.0 annot-version=v1.0 MVNPELLLLVGLLACSCCFVMTSASVVLMGDNVTMAFDDIEANFVVPVKGAGECGVLYVAEPLDACSKLSNEVIDGDENNSSTTRSSPFVLIVRGGGCSF EDKVRRAQAAGFRAAIVYDDEDGGLLVAMSGNSAGISIHAVFVTKSSGETLKNYAGSTDIEIWIIPSYEDSAWSIMAISFISLLAMSAVMATCFFVRRHR IRRERPRSSRGIREFHGMSKRLVKAMPSLNFTTVQEDNCTSMTCAICLEDYSVGEKIRILPCRHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGEPPASE STPLLSSSASSFASSSVLSSFRSTTSSAIRIGQPSRSPSVSHFPSYSGTTPYGQQSIGSCHQSLYSLSMSRSNADLRNMSSHRSSHLISSYGGYPSISPM NAVRYLTLYNNPSPSNASPSLLAGGSTSYQPRPLHCSESAASFSPFASTHSLPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	2.0	0.8717
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	2.0	0.8715
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	3.9	0.8519
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	5.4	0.7983
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	13.0	0.8273
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	13.7	0.8073
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	19.6	0.8378
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	20.3	0.8408
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	25.7	0.8396
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	28.6	0.7932

Compare expression of checked genes

Lus10006074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.