Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71990 607 / 0 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) AT3G19280 83 / 6e-17 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G49710 71 / 6e-13 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009440 [exp] 807 / 0 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10019855 [exp] 74 / 6e-14 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 72 / 1e-13 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10002401 [exp] 69 / 1e-12 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10014060 [exp] 63 / 2e-10 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082200 [exp] 635 / 0 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 616 / 0 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.009G101500 [exp] 76 / 9e-15 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00852 [flax] [poplar] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Lus10006076 pacid=23147726 polypeptide=Lus10006076 locus=Lus10006076.g ID=Lus10006076.BGIv1.0 annot-version=v1.0 ATGCTCTTGAAGAGACCAGTCAACACAATCACCATATCCCTGATGCTGATCGCCACATTCCTCATCCTATTCTTTGCCGGCTTCCTCCAATTCCCCCCAA CCTCCTCCTCCTTATCCGATTCGGTTGCCCGGTTCCGACCCCAGCAGACCAATTCAGCTGACCCGTTCGTTAATTTGCTCGCCGCTTTCAGGAAGTGGGA TGTTCAGGTGGGTTGTCCTCGATTCAGGGAGCTGCACAAGGAGGAGAGATTCAACGGGTCGTCGGGTTCTCTGCAGCGGGTCGGGTTAGATTCGGAATGT GGCGAGCTGAAGATGGGGCATGTTAGTGTGTTGGTCAAAGGGTGGACTTGGATCCCTGATAATCTGGATAATTTGTACTCGTGTCGATGTGGGTTGAGCT GCTTGTGGACTAAATCGGCCGTTCTTGCTGACAAGCCTGATGCTTTGATGTTTGAAACCACCACTCCACCATTTCAGAGGCGCAATGGAGATCCGCTTCG TGTCTACATGGACCTAGAAGCTGGCCGGAAACGCTCAGGAGTCGAAGATCTCTTCATCAGTTACCATGCCGGAGACGATGTTCAGTCAACTTATGCCGGC GCTCTGTTCCACAACGGTCGAAACTATCACGTGTCTCCACTGAAGAACAATGATACGCTCGTGTACTGGTCTTCCTCGCGCTGCCTTCCTCAAAGAAACA AGCTCGCAAAGAGTCTCCTCAGCTTGCTACCTCACCATTCGTTCGGAAAGTGCCTGAACAACGTCGGAGGACTCGACATGGCCATCTCGATGTACCCAGA ATGTGCCGCAACCAGCGAGACACCGAGATGGTGGGACCACCTACATTGCGCCATGTCCCACTACAAGTTCGTCCTGGCAATCGAGAACACCGCCACTGAT AGCTACGTGACCGAGAAGCTATTCTACGCATTGGATTCCGGCGCGGTGCCTATCTACTTTGGTGCGCCCAACGTTTGGGACTTCGTCCCGCCTAACTCGA TCATCGACGGGAGCAAGTTTAAATCCATGAAGGAGCTGGCTTCTTACGTTAAGGCTGTAGCGAATGATCCGGTAACGTACGGGGAGTACCACGCTTGGAG AAGGTGTGGCGTCATGGGGAACTACGCCAAGACTCGAGCTTTGAGCCTCGACACGTTGCCTTGCAGGCTGTGTGAAGCTGTCAGCAGACGTGGGGGTCGA AACCCGTAA
AA sequence Show only first row Show all	>Lus10006076 pacid=23147726 polypeptide=Lus10006076 locus=Lus10006076.g ID=Lus10006076.BGIv1.0 annot-version=v1.0 MLLKRPVNTITISLMLIATFLILFFAGFLQFPPTSSSLSDSVARFRPQQTNSADPFVNLLAAFRKWDVQVGCPRFRELHKEERFNGSSGSLQRVGLDSEC GELKMGHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSAVLADKPDALMFETTTPPFQRRNGDPLRVYMDLEAGRKRSGVEDLFISYHAGDDVQSTYAG ALFHNGRNYHVSPLKNNDTLVYWSSSRCLPQRNKLAKSLLSLLPHHSFGKCLNNVGGLDMAISMYPECAATSETPRWWDHLHCAMSHYKFVLAIENTATD SYVTEKLFYALDSGAVPIYFGAPNVWDFVPPNSIIDGSKFKSMKELASYVKAVANDPVTYGEYHAWRRCGVMGNYAKTRALSLDTLPCRLCEAVSRRGGR NP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	2.8	0.9401
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	3.2	0.9320
AT2G20760			Clathrin light chain protein (...		Lus10011194 [exp]	6.3	0.9258
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	6.7	0.9159
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	7.2	0.9128
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	7.3	0.9224
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	10.1	0.9308
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	11.0	0.9146
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	12.0	0.9268
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	13.0	0.9035

Compare expression of checked genes

Lus10006076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.